View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_39 (Length: 237)
Name: NF4336_low_39
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 11807144 - 11807350
Alignment:
| Q |
15 |
acatggttgttccctagtttggcaagttgaacagcatacacacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||| ||||| ||||||| || | ||||||||||||| |
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| T |
11807144 |
acatggttgttccctagtttggcaagttgaacagcaaatacacctacaccacctgaagcagaagtaaccaaagcgttcttcggctcgccagtcccatcaa |
11807243 |
T |
|
| Q |
115 |
gcttgactcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagc |
214 |
Q |
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|||| |||||||||||||||| || |||| | ||||||||||||| |||||||||||||| | ||||||||||| ||| |||||||||||||| ||| | |
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| T |
11807244 |
gcttagctcctccaatttcggtaagggcattacgagctgtgagaccagctataggtaaaccggaagcttcagcagttgagacttcagatggtctggcaac |
11807343 |
T |
|
| Q |
215 |
tgttaag |
221 |
Q |
| |
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||||||| |
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| T |
11807344 |
tgttaag |
11807350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 11801789 - 11801890
Alignment:
| Q |
120 |
actcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgtta |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11801789 |
actcctccaatttcggttagtgcatcacgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgtta |
11801888 |
T |
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| Q |
220 |
ag |
221 |
Q |
| |
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|| |
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| T |
11801889 |
ag |
11801890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 11838419 - 11838622
Alignment:
| Q |
18 |
tggttgttccctagtttggcaagttgaacagcatacacacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaagct |
117 |
Q |
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| T |
11838419 |
tggttgttccctagtttggcaagttgaacagcaaatgaacctacaccacctgaagcagcagttaccaaaacattcttctgctcgccagtcccatcaagct |
11838518 |
T |
|
| Q |
118 |
tgactcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagctgt |
217 |
Q |
| |
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| | |||||| ||||| || || |||||| ||||||| | |||||| ||||||||||| ||||||||||||||||| ||||||| |||||| | |||||| |
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| T |
11838519 |
taattcctccgatttctgtgagggcatcacgagctgttaaaccggcaataggtaaacccgcagcttcagcagctgagacttcaggtggtctggtagctgt |
11838618 |
T |
|
| Q |
218 |
taag |
221 |
Q |
| |
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|||| |
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|
| T |
11838619 |
taag |
11838622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 11855688 - 11855891
Alignment:
| Q |
15 |
acatggttgttccctagtttggcaagttgaacagcatacacacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccatcaa |
114 |
Q |
| |
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|||||||||||||||||||| |||||||||||| || | |||||||| ||||||||||||||||||||||| | ||||||||| | |||||||||||||| |
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| T |
11855688 |
acatggttgttccctagttttgcaagttgaacaacaaatacacctacaccacctgaagcagcagttaccaaaatgttcttgggctcaccagtcccatcaa |
11855787 |
T |
|
| Q |
115 |
gcttgactcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtcttgcagc |
214 |
Q |
| |
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||| ||||| |||| || ||| || ||||| ||||||| ||||||||| |||||||| || |||||||| || || |||||||||||||| ||||| |
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| T |
11855788 |
acttaactcccccaacttgggtgagcacatcacgagctgtttgaccggctacaggtaaactcgctgcttcagctgcggagacttcagatggtctggcagc |
11855887 |
T |
|
| Q |
215 |
tgtt |
218 |
Q |
| |
|
|||| |
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|
| T |
11855888 |
tgtt |
11855891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 11430736 - 11430932
Alignment:
| Q |
12 |
gtgacatggttgttccctagtttggcaagttgaacagcatacacacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccat |
111 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | ||| ||||||| |||||| | || |
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| T |
11430736 |
gtgacatggttgtttcctagtttggcaagttgaactgcatatacacctacgccacctgaagcagcggttaccagaatgtttttgggttcaccagtacgat |
11430835 |
T |
|
| Q |
112 |
caagcttgactcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtct |
208 |
Q |
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| T |
11430836 |
caagtttaattcctgccatttttgtgatggcatcatgagccgcgagaccggctacaggtaaaccggcaccttcagcagctgagacttcagatggtct |
11430932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 11564730 - 11564534
Alignment:
| Q |
12 |
gtgacatggttgttccctagtttggcaagttgaacagcatacacacctacgccacctgaagcagcagttaccaatacgttcttgggtttaccagtcccat |
111 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | ||| ||||||| |||||| | || |
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| T |
11564730 |
gtgacatggttgtttcctagtttggcaagttgaactgcatatacacctacgccacctgaagcagcggttaccagaatgtttttgggttcaccagtacgat |
11564631 |
T |
|
| Q |
112 |
caagcttgactcctccaatttcggttagtgcatcatgagctgtgagaccggctataggtaaacctgcagcttcagcagctgatacttcagatggtct |
208 |
Q |
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|||| || | |||| | |||| || | ||||||||||| | ||||||||||| ||||||||| ||| ||||||||||||| |||||||||||||| |
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| T |
11564630 |
caagtttaattcctgccatttttgtgatggcatcatgagccgcgagaccggctacaggtaaaccggcaccttcagcagctgagacttcagatggtct |
11564534 |
T |
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