View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_4 (Length: 570)
Name: NF4336_low_4
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 2136062 - 2136605
Alignment:
| Q |
18 |
gaaaactcatcataggtagttcacaaaaatgtttaggtaaatgaagttttaaacggtcataggttctattttgccatagtgaagctatgcaatcacttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136062 |
gaaaactcatcataggtagttcacaaaaatgtttaggtaaatgaagttttaaacggtcataggttctattttgccatagtgaagctatgcaatcacttct |
2136161 |
T |
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| Q |
118 |
ctcaagaatgagacttggtactccttgttctgataaacaagcagctactgctatacctgaaggaccagcacctactatgataggtccatgaatccataca |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136162 |
ctcaagaatgagacttggtactccttgctctgataaacaagcagctactgctatacctgaaggaccagcacctactatgataggtccatgaatccataca |
2136261 |
T |
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| Q |
218 |
cactttactttttctttgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagnnnnnnnnnnnnnnngtgttatgtgtg |
317 |
Q |
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| T |
2136262 |
cactttactttttctttgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagttttttcacttttttgtgttatgtgtg |
2136361 |
T |
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| Q |
318 |
tgaatgatgataaagtgggaatttaaagagttaggaaggagtttaatggtgaagtgaaaaaagggtcaaagaaagagttcagagattggttaaaaggttg |
417 |
Q |
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| T |
2136362 |
tgaatgatgataaagtgggaatttaaagagttaggaaggagtttaat-gtgaagtgaaaaaagggtcaaagaaagagttcagagattggttaaaaggttg |
2136460 |
T |
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| Q |
418 |
aacctttttaaatgaaggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtgagaagaaatg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136461 |
aacctttttaaatgaaggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtgagaagaaatg |
2136560 |
T |
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| Q |
518 |
gtgaacatttatagagatgtgttattgtgtatttatgatgatgtc |
562 |
Q |
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| T |
2136561 |
gtgaacatttatagagatgtgttattgtgtatttatgatgatgtc |
2136605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 29857860 - 29857940
Alignment:
| Q |
30 |
taggtagttcacaaaaatgtttaggtaaatgaagttttaaacggtcataggttctattttgccatagtgaagctatgcaat |
110 |
Q |
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| T |
29857860 |
taggtagttgacagaattgtttagggaggtgaagttttaatctgtcatatgttcttttttgccatagtgaagctatgcaat |
29857940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 39839170 - 39839088
Alignment:
| Q |
30 |
taggtagttcacaaaaatgtttaggtaaatgaagttttaaacggtcataggttctattttgccatagtgaagctatgcaatca |
112 |
Q |
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||||||||| ||| || ||||| || | |||||||| || | ||| |||||||| |||||||||||||| |||||||||||| |
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| T |
39839170 |
taggtagttgacagaattgttttggaaggtgaagtttcaatctgtcgtaggttcttttttgccatagtgatgctatgcaatca |
39839088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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