View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_40 (Length: 237)
Name: NF4336_low_40
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25731347 - 25731568
Alignment:
| Q |
1 |
attgagttttttgagaaaattaaggaatagtttcaggaccgaaattatataaatagaggatctgtgtagatgttttttcatcaccaaatgcgatacaacc |
100 |
Q |
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| T |
25731347 |
attgagttttttgagaaaattaaggaatagtttcaggaccaaaattatataaatataggatctgtgtagatgttttttcatcaccaaatgcgatacaacc |
25731446 |
T |
|
| Q |
101 |
tgtatagc-ttgcatcacaaaagtactacaatttccttactctttttctcatcatgtctacttctacccaaaacactgcccctggtactaatgcccagtg |
199 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25731447 |
tgtatagcattgcattacaaaagtactacaatttccttactctttttctcatcatgtctacttctacccaaaacactgcccctggtactaatgcccagtg |
25731546 |
T |
|
| Q |
200 |
aacacctttcaatccatccaac |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
25731547 |
aacacctttcaatccatccaac |
25731568 |
T |
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