View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_42 (Length: 235)
Name: NF4336_low_42
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_42 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 9072213 - 9072432
Alignment:
| Q |
16 |
caatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatcta |
115 |
Q |
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||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||| || | | || |||||| | ||||| ||||||||||||| |
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| T |
9072213 |
caatccatcaactacaacaatttcacaatccgagttgctgatcctggagtcatagaatataatttcaatttacttccacattattcattgtctcgatcta |
9072312 |
T |
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| Q |
116 |
atttctgtgatacctataataacgacgaaaattgtacggatccataccatgccgattacaggggccaactctacggttctgaacacaagcttttcgagca |
215 |
Q |
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| T |
9072313 |
atttctgtgatacctataataacgacgaaaattgtacggatccataccatgccggttacaggggccaactctacagttctgaaaacaagcttttcgagca |
9072412 |
T |
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| Q |
216 |
cattgtttaccttaactgta |
235 |
Q |
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|||||||||||||||||||| |
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| T |
9072413 |
cattgtttaccttaactgta |
9072432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 9136426 - 9136539
Alignment:
| Q |
22 |
atcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatctaatttct |
121 |
Q |
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|||||||||||||||||||||||| || | |||||||||||||| | |||| || |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9136426 |
atcaactacaacgatttcacaatccgattggttgatcctggagttcaacaatctaattgctcttcacttcctctctattctttgtctcgatctaatttct |
9136525 |
T |
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| Q |
122 |
gtgatacctataat |
135 |
Q |
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| T |
9136526 |
gcgatacctataat |
9136539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 8972312 - 8972206
Alignment:
| Q |
22 |
atcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatctaatttct |
121 |
Q |
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| T |
8972312 |
atcaactacaacaatttcacaatccgattggttgatcctggaattcaacaatctaattgctcttcacttcctctctattcgttgtctcgatctaatttct |
8972213 |
T |
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| Q |
122 |
gtgatac |
128 |
Q |
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||||||| |
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| T |
8972212 |
gtgatac |
8972206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 9065591 - 9065485
Alignment:
| Q |
22 |
atcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatctaatttct |
121 |
Q |
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|||||||||||| |||| ||||||||| | |||||||||||||| |||| || |||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
9065591 |
atcaactacaacaattttacaatcagactggttgatcctggagttcaagaaatgaattgctcttcacttccacgccattcgttgtctcgatctaatttct |
9065492 |
T |
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| Q |
122 |
gtgatac |
128 |
Q |
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||||||| |
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| T |
9065491 |
gtgatac |
9065485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 8864058 - 8864170
Alignment:
| Q |
16 |
caatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatcta |
115 |
Q |
| |
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||||| |||||||||||| |||||||||||||| | |||||||| ||||| | |||| || |||||||||||||||||||||| ||||||||||| |
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| T |
8864058 |
caatccatcaactacaacaatttcacaatcagactggttgatcccggagttcaacaatctaattgctcttcacttcctcgctatttcttgtctcgatcgg |
8864157 |
T |
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| Q |
116 |
atttctgtgatac |
128 |
Q |
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|||| |||||||| |
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| T |
8864158 |
atttttgtgatac |
8864170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 9007358 - 9007239
Alignment:
| Q |
16 |
caatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatcta |
115 |
Q |
| |
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||||| |||||||||||| ||||||||||| || | ||||||| |||||| | |||| || |||||||| | |||| ||||| ||||||| ||||| |
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| T |
9007358 |
caatccatcaactacaacaatttcacaatccgattggttgatcttggagttcaacaatctaattgctcttctatacctctttattctttgtctcaatcta |
9007259 |
T |
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| Q |
116 |
atttctgtgatacctataat |
135 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9007258 |
atttctgtgatacctataat |
9007239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 9099746 - 9099852
Alignment:
| Q |
22 |
atcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcgatctaatttct |
121 |
Q |
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||||||||||| ||||||||||| || | |||||||||| ||| | |||| || |||||||||||||| ||| |||| ||||||||||| ||||||| |
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| T |
9099746 |
atcaactacaataatttcacaatccgattagttgatcctgaagttcaacaatctaattgctcttcacttccgcgccattccttgtctcgatcaaatttct |
9099845 |
T |
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| Q |
122 |
gtgatac |
128 |
Q |
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|| |||| |
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| T |
9099846 |
gtaatac |
9099852 |
T |
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