View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_low_7 (Length: 440)

Name: NF4336_low_7
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_low_7
NF4336_low_7
[»] chr4 (3 HSPs)
chr4 (61-424)||(44574483-44574847)
chr4 (1-45)||(44574364-44574408)
chr4 (1-45)||(48795640-48795684)
[»] chr7 (1 HSPs)
chr7 (1-38)||(22490184-22490221)
[»] chr6 (2 HSPs)
chr6 (1-45)||(10123191-10123235)
chr6 (61-90)||(10123310-10123339)
[»] chr5 (2 HSPs)
chr5 (1-45)||(25383177-25383221)
chr5 (61-96)||(25383067-25383102)
[»] chr1 (2 HSPs)
chr1 (1-45)||(28244947-28244991)
chr1 (61-90)||(28245066-28245095)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 61 - 424
Target Start/End: Original strand, 44574483 - 44574847
Alignment:
Q  61 attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574483 attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt 44574582  T
Q  161 aactgattgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata 260  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574583 aacagatcgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata 44574682  T
Q  261 taaaactagaccaaaactaaactacatggtgcttctctaaggaaaaag-atctaacaatagctaaaatagaactagagtttatgaaatttaaactttagc 359  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  44574683 tacaactagaccaaaactaaactacatggtgcttctctaaggaaaaagaatctaacaataactaaaagagaactagagtttatgaaatttaaactttagc 44574782  T
Q  360 agcatgagagtatgatcaagttgccttttatctagtgcctactctatccaaaaccttttcctcat 424  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44574783 agcatgagagtatgatcaagttgcctttcatctagtgcctactctatccaaaaccttttcctcat 44574847  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44574364 - 44574408
Alignment:
Q  1 tgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44574364 tgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 44574408  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48795684 - 48795640
Alignment:
Q  1 tgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  48795684 tgctaaaaatgttcaatatgatgaagtgtaatgttacaaagacat 48795640  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22490184 - 22490221
Alignment:
Q  1 tgctaaaaatgttcaatatgatgaagtgtaatgttaca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22490184 tgctaaaaatgttcaatatgatgaagtgtaatgttaca 22490221  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10123191 - 10123235
Alignment:
Q  1 tgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 45  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  10123191 tgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 10123235  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 10123310 - 10123339
Alignment:
Q  61 attggatcattgacacaatgtacatgtatt 90  Q
    ||||||||||||||||||||||||||||||    
T  10123310 attggatcattgacacaatgtacatgtatt 10123339  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25383221 - 25383177
Alignment:
Q  1 tgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 45  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  25383221 tgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 25383177  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 25383102 - 25383067
Alignment:
Q  61 attggatcattgacacaatgtacatgtattgtgaaa 96  Q
    |||||||||||||||||||||||||||||| |||||    
T  25383102 attggatcattgacacaatgtacatgtattatgaaa 25383067  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28244947 - 28244991
Alignment:
Q  1 tgctaaaaatgttcaatatgatgaagtgtaatgttacagagacat 45  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  28244947 tgctaaaaatgttcaatatgatgaagtgtaatgtttcaaagacat 28244991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 28245066 - 28245095
Alignment:
Q  61 attggatcattgacacaatgtacatgtatt 90  Q
    ||||||||||||||||||||||||||||||    
T  28245066 attggatcattgacacaatgtacatgtatt 28245095  T

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