View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_low_8 (Length: 437)

Name: NF4336_low_8
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_low_8
NF4336_low_8
[»] chr4 (4 HSPs)
chr4 (53-421)||(44573953-44574318)
chr4 (52-119)||(48795730-48795797)
chr4 (12-57)||(44574342-44574387)
chr4 (12-57)||(48795661-48795707)
[»] chr7 (2 HSPs)
chr7 (53-218)||(22489974-22490137)
chr7 (12-57)||(22490161-22490207)
[»] chr5 (2 HSPs)
chr5 (53-218)||(25383268-25383431)
chr5 (12-57)||(25383198-25383244)
[»] chr6 (4 HSPs)
chr6 (181-218)||(10123149-10123186)
chr6 (12-42)||(10123184-10123214)
chr6 (185-218)||(10123024-10123057)
chr6 (181-218)||(19306583-19306620)
[»] chr1 (2 HSPs)
chr1 (12-42)||(28244940-28244970)
chr1 (181-218)||(28244905-28244942)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 53 - 421
Target Start/End: Complemental strand, 44574318 - 44573953
Alignment:
Q  53 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574318 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 44574219  T
Q  153 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgatttctttaaattccacgtacgttaaacttaagtgttc 252  Q
    ||||||||||||||||||||||||||  ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |    
T  44574218 cgctgccagttattattaagtcatcc--atacatatgcacactataattaaggatgtttatgatttctttaaattccacgtacattaaacttaagtgcac 44574121  T
Q  253 caagcccataaagagcattagaaaggaatatatcctacaactttgnnnnnnnctgaaaaggcacatgattgtaacaaagtgcaccaaaagtattcaaatg 352  Q
    | || ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44574120 c-aggccataaagagcattagaaaggaatatatcctacaactttgtttttctctgaaaaggcacatgattgtaacaaagtgcaccaaaagtattcaaatg 44574022  T
Q  353 attcattgatagctttctcccagatcaggtctctttcggaaccactcctataatctctgtgtagaacat 421  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44574021 attcattgatagctttctcccagatcatgtctctttcggaaccactcctataatctctgtgtagaacat 44573953  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 48795730 - 48795797
Alignment:
Q  52 ctttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttca 119  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  48795730 ctttcacaagtttccttccaagaaagtatgacaattattctatattagcatttcaaactcagacttca 48795797  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 44574387 - 44574342
Alignment:
Q  12 tcatcatattgaacatttttagcacctcataacataatttctttca 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44574387 tcatcatattgaacatttttagcacctcataacataatttctttca 44574342  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 48795661 - 48795707
Alignment:
Q  12 tcatcatattgaacatttttagcacctca-taacataatttctttca 57  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  48795661 tcatcatattgaacatttttagcacctcatttacataatttctttca 48795707  T

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Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 22490137 - 22489974
Alignment:
Q  53 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 152  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22490137 tttcacaagtttcctttcaagaaagtatgacaattcttctatattagcatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 22490038  T
Q  153 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgattt 218  Q
    ||||| ||| ||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  22490037 cgctgtcagatatcattaagtcatccatat--atatgcacactataattgaggatgtttatgattt 22489974  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 22490207 - 22490161
Alignment:
Q  12 tcatcatattgaacatttttagcacctca-taacataatttctttca 57  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  22490207 tcatcatattgaacatttttagcacctcacttacataatttctttca 22490161  T

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Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 25383268 - 25383431
Alignment:
Q  53 tttcacaagtttccttccaagaaagtgtgacaattcttctatattagtatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 152  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25383268 tttcacaagtttcctttcaagaaagtatgacaattcttctatattagcatttcaaactcagacttcatcaatctcttaaaatattcaatctcatttttta 25383367  T
Q  153 cgctgccagttattattaagtcatccatatatatatgcacactgtaattgaggatgtttatgattt 218  Q
    ||||| ||| ||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  25383368 cgctgtcagatatcattaagtcatcc--atatatatgcacactataattgaggatgtttatgattt 25383431  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 25383198 - 25383244
Alignment:
Q  12 tcatcatattgaacatttttagcacctca-taacataatttctttca 57  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  25383198 tcatcatattgaacatttttagcacctcatttacataatttctttca 25383244  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 10123186 - 10123149
Alignment:
Q  181 atatatatgcacactgtaattgaggatgtttatgattt 218  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10123186 atatatatgcacactataattgaggatgtttatgattt 10123149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 10123214 - 10123184
Alignment:
Q  12 tcatcatattgaacatttttagcacctcata 42  Q
    |||||||||||||||||||||||||||||||    
T  10123214 tcatcatattgaacatttttagcacctcata 10123184  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 10123057 - 10123024
Alignment:
Q  185 atatgcacactgtaattgaggatgtttatgattt 218  Q
    ||||||||||| ||||||||||||||||||||||    
T  10123057 atatgcacactataattgaggatgtttatgattt 10123024  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 19306620 - 19306583
Alignment:
Q  181 atatatatgcacactgtaattgaggatgtttatgattt 218  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  19306620 atatatatgcacactataattaaggatgtttatgattt 19306583  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 28244970 - 28244940
Alignment:
Q  12 tcatcatattgaacatttttagcacctcata 42  Q
    |||||||||||||||||||||||||||||||    
T  28244970 tcatcatattgaacatttttagcacctcata 28244940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 28244942 - 28244905
Alignment:
Q  181 atatatatgcacactgtaattgaggatgtttatgattt 218  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  28244942 atatatatgcacactataattgaggatgtttatcattt 28244905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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