View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4337-Insertion-6 (Length: 109)
Name: NF4337-Insertion-6
Description: NF4337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4337-Insertion-6 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 97; Significance: 3e-48; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 486701 - 486809
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
486701 |
ctaaaactatagacagttattggatttttgaaaatcagattcaaacatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
486800 |
T |
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| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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| T |
486801 |
tacttggta |
486809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 495212 - 495322
Alignment:
| Q |
1 |
ctaaaactatagaca--attattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttg |
98 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
495212 |
ctaaaactatagacacaattattggatttttgaaaatcagattcaaacatggatgtatcagaactgtgtccaactgttgatgcaatcagagctttccttg |
495311 |
T |
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| Q |
99 |
aatatttggta |
109 |
Q |
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|||| |||||| |
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| T |
495312 |
aatacttggta |
495322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 3e-48; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42278431 - 42278539
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42278431 |
ctaaaactatagacagttattggatttttgaaaatcagattcaaacatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
42278530 |
T |
|
| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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|
| T |
42278531 |
tacttggta |
42278539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 8e-46
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42257841 - 42257949
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42257841 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaacatggatgcatcagaagtgtgtccaactgttgatgcaatcagagctttccttgaa |
42257940 |
T |
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| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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| T |
42257941 |
tacttggta |
42257949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 42266438 - 42266543
Alignment:
| Q |
4 |
aaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaatat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
42266438 |
aaactatagacaattattggatttttgaaaatcagattcaaacatggatgtatcagaagtctgtccaactgttgatgcaatcagagctttccttgaatac |
42266537 |
T |
|
| Q |
104 |
ttggta |
109 |
Q |
| |
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|||||| |
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|
| T |
42266538 |
ttggta |
42266543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 5e-41
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42283950 - 42284058
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42283950 |
ctaaaaccatagtcaattattggatttttgaaaatcagattcaaacatggatgtattagaagtgtgtccaactgttgatgcaatcagagctttccttgaa |
42284049 |
T |
|
| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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|
| T |
42284050 |
tacttggta |
42284058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 7691740 - 7691848
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |
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| T |
7691740 |
ctaaaactatagtcaattattggatttttgaaaatcagattcaaacatggatgtatcagaactgtgtccaactgttgaattaatcagagctttccttgaa |
7691839 |
T |
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| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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| T |
7691840 |
tacttggta |
7691848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42270923 - 42271031
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||||||||||| || || | |||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42270923 |
ctaaaaccatagtcaagtattggatttttgaaaatcagattcaaacattgacggatcaaaagtgtgtccaactgttgatgcaatcagagctttccttgaa |
42271022 |
T |
|
| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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| T |
42271023 |
tacttggta |
42271031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 42252350 - 42252455
Alignment:
| Q |
1 |
ctaaaactatagacaattattggatttttgaaaatcagattcaaaaatggatgtatcagaagtgtgtccaactgttgatgcaataagagctttccttgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||| ||||||||| ||||||||||||||| |
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| T |
42252350 |
ctaaaactatagacaattattggatttttgaaaattagattcaaacatggatgcatcaaca---tgtccaactgctgatgcaatcagagctttccttgaa |
42252446 |
T |
|
| Q |
101 |
tatttggta |
109 |
Q |
| |
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|| |||||| |
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|
| T |
42252447 |
tacttggta |
42252455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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