View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4337_high_4 (Length: 310)
Name: NF4337_high_4
Description: NF4337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4337_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 41350865 - 41350669
Alignment:
| Q |
1 |
agatcaatacccgtatctaccggttgaagcacaaacaagagctccactatctaatagaatatgcacacattcaggccgtctttgtcgagatgccaaatgc |
100 |
Q |
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| T |
41350865 |
agatcaatacccgtatctaccggtcgaagcacaaacaagagctccgctatctaatagaatatgcacacattcaggccgtctttgtcgagatgccaaatgc |
41350766 |
T |
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| Q |
101 |
aacggcgtcgcaccctttccatctctaacattcacaaaccgaacaaatcccctgcaaccaattcaagaacatttaaaaaaccataacaacatagcat |
197 |
Q |
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| T |
41350765 |
aacggcgtcgcaccctttccatctctaacattcacaaaccgaacaaatcccctacaaccaattcaagaacatttaaaaaaccataacaacatagcat |
41350669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 23713136 - 23712980
Alignment:
| Q |
1 |
agatcaatacccgtatctaccggttgaagcacaaacaagagctccactatctaatagaatatgcacacattcaggccgtctttgtcgagatgccaaatgc |
100 |
Q |
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|||||||||||| ||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
23713136 |
agatcaatacccatatctgctagttgaagcacaaacaagagctccactacacaatagaatgtgcacacattcaggccgtctttgacgagctgccaaatgc |
23713037 |
T |
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| Q |
101 |
aacggcgtcgcaccctttccatctctaacattcacaaaccgaacaaatcccctgcaa |
157 |
Q |
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| T |
23713036 |
aacggtgtagcacctctaccgtctctaatattcacaaaccgtgcaaaccccctgcaa |
23712980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 7346840 - 7346874
Alignment:
| Q |
8 |
tacccgtatctaccggttgaagcacaaacaagagc |
42 |
Q |
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| T |
7346840 |
tacccgtatccaccggttgaagcacaaacaagagc |
7346874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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