View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4338_high_1 (Length: 501)

Name: NF4338_high_1
Description: NF4338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4338_high_1
NF4338_high_1
[»] chr2 (1 HSPs)
chr2 (9-483)||(39314181-39314657)
[»] chr4 (4 HSPs)
chr4 (309-372)||(38766126-38766189)
chr4 (308-372)||(17135132-17135196)
chr4 (313-372)||(14854646-14854705)
chr4 (302-372)||(35972373-35972443)
[»] chr1 (4 HSPs)
chr1 (302-372)||(9781030-9781100)
chr1 (339-372)||(32883588-32883621)
chr1 (309-373)||(789751-789815)
chr1 (306-358)||(45806270-45806322)
[»] chr8 (4 HSPs)
chr8 (313-372)||(13468786-13468845)
chr8 (306-373)||(15682963-15683030)
chr8 (313-372)||(19715767-19715826)
chr8 (306-360)||(31535607-31535661)
[»] chr6 (3 HSPs)
chr6 (306-373)||(12411182-12411249)
chr6 (298-358)||(25084060-25084120)
chr6 (306-373)||(5944876-5944943)
[»] chr5 (3 HSPs)
chr5 (311-372)||(5123539-5123600)
chr5 (313-372)||(10591968-10592027)
chr5 (339-373)||(36212963-36212997)
[»] chr7 (3 HSPs)
chr7 (302-373)||(30614722-30614793)
chr7 (313-373)||(8839321-8839381)
chr7 (313-373)||(31492144-31492204)
[»] chr3 (2 HSPs)
chr3 (323-372)||(20861299-20861348)
chr3 (322-370)||(30996008-30996056)


Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Original strand, 39314181 - 39314657
Alignment:
Q  9 gaagaaaataacataatcggtagtgtaggtgaggaaccacgaacgatccaatgatggtgtgatttaaactccagcatatgattaattcattgaatagaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39314181 gaagaaaataacataatcggtagtgtaggtgaggaaccacgaacgatccaatgatggtgtgatttaaactccagcatatgattaattcattgaatagaaa 39314280  T
Q  109 tgactatgaatctgacaaaataagaaaaatgatagaagaagggcagggccggctaaggtcatcaccttagacttttaaagatgtaaatatt--taaccta 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  39314281 tgactatgaatccgacaaaataagaaaaatgatagaagaagggcagagccggctaaggtcatcaccttagacttttaaagatgtaaatatttataaccta 39314380  T
Q  207 ataaaaatgtcttatattctactatttttaaactaagtgactcaaaagcgtttagaaaagatgacacgggnnnnnnnnaacttaatcataacaaagtctt 306  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||        ||||||||||||| ||  ||||    
T  39314381 ataaaaatgtcttatattctactattttaaaactaagtgactcaaaagcgtttagaaaagatgacacaggttttttctaacttaatcataataagatctt 39314480  T
Q  307 gagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccatttattgctttgtttgaattgtaaattgtgtatcgag 406  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  39314481 gagtttgaattcagttttgggcatgcagctgcgttaaaactcgtagggagagtttgccgcccatttgttgctttgtttgaattgcaaattgtgtatcgag 39314580  T
Q  407 aaaaacttacatatgatttgatttgaacggacaatttagaaagcgcggaatgctaagatcttccaacaaaagaagat 483  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39314581 aaaaacttacatgtgatttaatttgaacggacaatttagaaagcgcggaatgctaagatcttccaacaaaagaagat 39314657  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 38766126 - 38766189
Alignment:
Q  309 gtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||||||| ||| |||||||||| ||| |||||||||||| |||||||||| ||||||||||||    
T  38766126 gtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtctgccgcccattt 38766189  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 17135132 - 17135196
Alignment:
Q  308 agtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||| |||| ||| |||| ||||| ||| |||||||||||| ||||||||||||||||| |||||    
T  17135132 agttcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagtttgccgcgcattt 17135196  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 14854646 - 14854705
Alignment:
Q  313 gaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||| ||| |||||||||| |||  ||||||||||| ||||||||| |||||||||||||    
T  14854646 gaatccagccttgggcatgcagcatcgttaaaactcttagggagagcttgccgcccattt 14854705  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 372
Target Start/End: Original strand, 35972373 - 35972443
Alignment:
Q  302 gtcttgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||||| ||| |||| ||| | |||||||  ||| |||||||||||  |||||||||||||||||||||||    
T  35972373 gtcttgggttcgaatccagccatgggcatacagcagcgttaaaactattagggagagtttgccgcccattt 35972443  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 9781100 - 9781030
Alignment:
Q  302 gtcttgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||||||||| |||| ||| |||||||||| ||| |||||||||||| ||||||||||  |||||||||||    
T  9781100 gtcttgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagtcggccgcccattt 9781030  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 32883621 - 32883588
Alignment:
Q  339 gttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||||||||| |||||||||||||||||||||||    
T  32883621 gttaaaactcttagggagagtttgccgcccattt 32883588  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 789751 - 789815
Alignment:
Q  309 gtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||||||||||||||||| |||| || ||| ||||||| | |||||| ||||| ||||| |||||    
T  789751 gtttgaattcagtcttggacatgcaggtgccttaaaacgcttagggaaagtttaccgcctattta 789815  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 45806270 - 45806322
Alignment:
Q  306 tgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagag 358  Q
    |||||| ||||||||||||||||||| ||| |  ||||||||| |||||||||    
T  45806270 tgagttcgaattcagtcttgggcatgcagcagttttaaaactcttagggagag 45806322  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 13468845 - 13468786
Alignment:
Q  313 gaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||| ||| |||||||||||||| |||||||||||| ||| |||||| ||||||||||||    
T  13468845 gaatccagccttgggcatgtagcagcgttaaaactcttagagagagtctgccgcccattt 13468786  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 15682963 - 15683030
Alignment:
Q  306 tgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||||| |||| ||| |||||||||| ||| |||||||||||| |||||||||  |||||||||||||    
T  15682963 tgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccattta 15683030  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 19715826 - 19715767
Alignment:
Q  313 gaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||| ||| |||||||||| ||| ||||||||||||  |||||||| |||||||||||||    
T  19715826 gaatccagccttgggcatgcagcagcgttaaaactctcagggagagcttgccgcccattt 19715767  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 31535607 - 31535661
Alignment:
Q  306 tgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtt 360  Q
    ||||||||| |||||||||||||||| |||  ||| ||||||| |||||||||||    
T  31535607 tgagtttgagttcagtcttgggcatgcagccacgtgaaaactcttagggagagtt 31535661  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 12411182 - 12411249
Alignment:
Q  306 tgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||||| |||| ||| |||||||||| ||| |||||||||||| |||| ||||| |||||||||||||    
T  12411182 tgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgccgcccattta 12411249  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 25084060 - 25084120
Alignment:
Q  298 caaagtcttgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagag 358  Q
    |||||||||||||| |||||||||||||| |||| |||   |||||||||| |||||||||    
T  25084060 caaagtcttgagttcgaattcagtcttggacatgcagcaatgttaaaactcttagggagag 25084120  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 5944876 - 5944943
Alignment:
Q  306 tgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||||| |||||||||||| | |||||| |   |||||||||  ||||||||||||||||||||||||    
T  5944876 tgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagtttgccgcccattta 5944943  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 5123600 - 5123539
Alignment:
Q  311 ttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||||||||| |||||||||| ||| | |||||||||| |||||||||  ||||||||||||    
T  5123600 ttgaattcagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccattt 5123539  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 10591968 - 10592027
Alignment:
Q  313 gaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    |||| ||| |||||||||| ||| | |||||||||| |||||||||| ||||||||||||    
T  10591968 gaatccagccttgggcatgcagcagtgttaaaactcttagggagagtctgccgcccattt 10592027  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 373
Target Start/End: Original strand, 36212963 - 36212997
Alignment:
Q  339 gttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||||||||| ||||||||||||||||||||||||    
T  36212963 gttaaaactcttagggagagtttgccgcccattta 36212997  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 30614793 - 30614722
Alignment:
Q  302 gtcttgagtttgaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    ||||| |||||||||| ||| ||||||||| | | |||||||||||| ||| ||||||||| ||| ||||||    
T  30614793 gtcttaagtttgaatttagttttgggcatgcatcagcgttaaaactcttagagagagtttgtcgctcattta 30614722  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 8839381 - 8839321
Alignment:
Q  313 gaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||| ||| |||||||||| ||| |||||||||||| |||||||| | ||||||| |||||    
T  8839381 gaatccagccttgggcatgcagcagcgttaaaactcttagggagaatctgccgcctattta 8839321  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 31492144 - 31492204
Alignment:
Q  313 gaattcagtcttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattta 373  Q
    |||| ||| |||||||||| ||| | |||||||||| |||||||||  |||||||||||||    
T  31492144 gaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccattta 31492204  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 20861299 - 20861348
Alignment:
Q  323 ttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccattt 372  Q
    ||||||||| ||| |||||||||||| |||||||||  ||||||||||||    
T  20861299 ttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccattt 20861348  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 30996056 - 30996008
Alignment:
Q  322 cttgggcatgtagctgcgttaaaactcgtagggagagtttgccgcccat 370  Q
    |||||||||| | | |||||||||||| |||||||||| ||||||||||    
T  30996056 cttgggcatgcaacagcgttaaaactcttagggagagtctgccgcccat 30996008  T

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