View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4338_high_2 (Length: 430)
Name: NF4338_high_2
Description: NF4338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4338_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 88 - 422
Target Start/End: Complemental strand, 18108047 - 18107716
Alignment:
| Q |
88 |
tgttttcgtctcatggtttgacggtaggattggataaactcatgatcgtaaatattctgactattcatgcattcagtctctaagtgtgtgtatttggaat |
187 |
Q |
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| T |
18108047 |
tgttttcgtctcatggtttgacggtaggattggataaactcatgatcgtaaatattctgactattcatgcattcagtctctaagtgtgtgtatttggaat |
18107948 |
T |
|
| Q |
188 |
aggtttgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaag |
287 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107947 |
aggtctgctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaaaattaacatcagaaattggattcaccaaacccaacttgggaag |
18107848 |
T |
|
| Q |
288 |
atgttactagaatacaaaatcagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttctaaattttcaat |
387 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107847 |
atgttactagtatacaaaatc---agcatacctaaagagttaccaaacttgcactgttccaaactatagtacatccatacctaccttctaaattttcaat |
18107751 |
T |
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| Q |
388 |
ttctgcatttatatttcatattaggcagtattatc |
422 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
18107750 |
ttctgcatttatatttcatattaggcagtattatc |
18107716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 79 - 421
Target Start/End: Original strand, 18137930 - 18138265
Alignment:
| Q |
79 |
tacatttgttgttttcgtctcatggtttgacggtaggattggataaactcatgatcgtaaatattctgactattcatgcattcagtctctaagtgtgtgt |
178 |
Q |
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| T |
18137930 |
tacatttgttgttttagggtcatggtttgatggtaggattggataaactcatgataataaatactc--acaattcatacattcaatctctaagtgtgt-- |
18138025 |
T |
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| Q |
179 |
atttggaataggtttg-ctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaaccca |
277 |
Q |
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| T |
18138026 |
atttggaataggtttttctcacaaagaccaa-cctcaaaacatgataaaagaacgaagccaaagaaaaattaacatcagaaattggattcaccaaaccca |
18138124 |
T |
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| Q |
278 |
acttgggaagatgttactagaatacaaaatcagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttcta |
377 |
Q |
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| T |
18138125 |
acttgggaagatgttactagtatacaaaat---caggatatctaaagagttacctaacttgcactgttccaaactatagtacattcatacctaccttctg |
18138221 |
T |
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| Q |
378 |
aattttcaatttctgcatttatatttcatattaggcagtattat |
421 |
Q |
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| T |
18138222 |
aaatttcaatttctgcatttatatttattattaggcagtattat |
18138265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 208 - 421
Target Start/End: Complemental strand, 18098397 - 18098195
Alignment:
| Q |
208 |
aacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaat |
307 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||| || |||||||||||||||| || ||| |
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| T |
18098397 |
aacctcaaaacaggataaaagaacaaagccatagaaacatta---tcagaacttggattcaccaaacccgacctgggaagatgttactataa-----aat |
18098306 |
T |
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| Q |
308 |
cagcagcatacctaaagagttaccaaacttgcactgttgcaaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttcata |
407 |
Q |
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||| | ||| ||||||||||| | ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
18098305 |
cagga-cat--ctaaagagttatctaacttttactgttccaaactatagtacattgatacctaccttctaaattttcaatttctgcattgatatttccta |
18098209 |
T |
|
| Q |
408 |
ttaggcagtattat |
421 |
Q |
| |
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|||| ||||||||| |
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| T |
18098208 |
ttagacagtattat |
18098195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 15951715 - 15951824
Alignment:
| Q |
157 |
cattcagtctctaagtgtgtgtatttggaataggttt-gctcacaaagaccaaacctcaaaacatgataaaagaacaaagccaaagaaacattaacatca |
255 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||||| | |||||||| |
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| T |
15951715 |
cattcaatctctaagtgtgt--atttggaataggttttgctcacaaagaccaa-cctttaaacatgataaaagaacgaagccgaagaaa-aataacatca |
15951810 |
T |
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| Q |
256 |
gaaattggattcac |
269 |
Q |
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| T |
15951811 |
gaaattggattcac |
15951824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 18082957 - 18082900
Alignment:
| Q |
364 |
atacctaccttctaaattttcaatttctgcatttatatttcatattaggcagtattat |
421 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
18082957 |
atacctaccttctaaattttcaatttctgcattgatatttcctattaggcagtattat |
18082900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 11547626 - 11547683
Alignment:
| Q |
347 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatttc |
404 |
Q |
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||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
11547626 |
caaactatagtacattgatacataccttctaaatttccaatttctgcatttatatttc |
11547683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 18083074 - 18082978
Alignment:
| Q |
208 |
aacctcaaaacatgataaaagaacaaagccaaagaaacattaacatcagaaattggattcaccaaacccaacttgggaagatgttactagaatacaaaat |
307 |
Q |
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|||||||||||| | |||||||||||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||| ||| ||||||||| |
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| T |
18083074 |
aacctcaaaacaagttaaaagaacaaagccatagaaacatt---atcagagcttggattcaccaaacctgacctgggaagatgttcctaatatacaaaat |
18082978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 11552387 - 11552442
Alignment:
| Q |
347 |
caaactatagtacatccatacctaccttctaaattttcaatttctgcatttatatt |
402 |
Q |
| |
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||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||| |
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| T |
11552387 |
caaactatagtacattgatacgtaccttttaaatttccaatttctgcatttatatt |
11552442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 18099207 - 18099162
Alignment:
| Q |
22 |
actttgtatgaaatgtgctt-cagttatctaaattttcttcttaaa |
66 |
Q |
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|||||||||||||||||||| |||| |||||||||||||| ||||| |
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| T |
18099207 |
actttgtatgaaatgtgcttccagtgatctaaattttctttttaaa |
18099162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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