View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4338_high_3 (Length: 244)
Name: NF4338_high_3
Description: NF4338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4338_high_3 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33983476 - 33983704
Alignment:
| Q |
1 |
ctaatatgaagatagaggttcctcaggttgatgctaacttaaactagctttagtaaatgatctcataagacctcttctttgaatgacttctgtat-atga |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33983476 |
ctaatatgaagatagaggttcctcaggttgatgctaacttaaactaactttagtaaatgatctcataagacctcttctttgaatgacttctgtatcatga |
33983575 |
T |
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| Q |
100 |
taaaactcctccctttctttgaatagctttccaaccttttctaatacttgtttatgtaagttgctctagtattatagtatataattacaattcttttgca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
33983576 |
taaaactcctccctttctttgaatagctttccaaccttttctaatacttgtttatgtaagtttctctagtattgtagtatataattacaattcttttgca |
33983675 |
T |
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| Q |
200 |
atcttttgtataactacatgatttgtatt |
228 |
Q |
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| T |
33983676 |
atcttttgtataactacatgatttgtatt |
33983704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33953868 - 33953908
Alignment:
| Q |
3 |
aatatgaagatagaggttcctcaggttgatgctaacttaaa |
43 |
Q |
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| T |
33953868 |
aatatgaagatagaggttcttcatgttgatgttaacttaaa |
33953908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33961174 - 33961214
Alignment:
| Q |
3 |
aatatgaagatagaggttcctcaggttgatgctaacttaaa |
43 |
Q |
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| T |
33961174 |
aatatgaagatagaggttcttcatgttgatgttaacttaaa |
33961214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33976469 - 33976509
Alignment:
| Q |
3 |
aatatgaagatagaggttcctcaggttgatgctaacttaaa |
43 |
Q |
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| T |
33976469 |
aatatgaagatagaggttcttcatgttgatgttaacttaaa |
33976509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 33993388 - 33993428
Alignment:
| Q |
3 |
aatatgaagatagaggttcctcaggttgatgctaacttaaa |
43 |
Q |
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| T |
33993388 |
aatatgaagatagaggttcttcatgttgatgttaacttaaa |
33993428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 209
Target Start/End: Complemental strand, 8275557 - 8275358
Alignment:
| Q |
5 |
tatgaagatagaggttcctcaggttgatgctaacttaaactagctttagtaaatgatctcataagacctcttctttgaatgacttctgtatatgataaaa |
104 |
Q |
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||||||||||||||||||||| ||||||| ||||||||| | | | | |||| ||||| || |||| |||||||||||| || ||||| | |
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| T |
8275557 |
tatgaagatagaggttcctcatgttgatgttaacttaaattgccatcattaaaggatctgctacgaccgcttctttgaatggattttgtatc-----acc |
8275463 |
T |
|
| Q |
105 |
ctcctccctttctttgaatagctttccaaccttttctaatacttgtttatgtaagttgctctagtattatagtatataattacaattcttttgcaatctt |
204 |
Q |
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| T |
8275462 |
ccccttccttcctttgaatggcattccaacctttcctagcacttgtatctgtaaagtgctctagtattatagtatataactaaaattcttttgtaatctt |
8275363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 13432 - 13510
Alignment:
| Q |
3 |
aatatgaagatagaggttcctcaggttgatgctaacttaaactagctttagtaaatgatctcataagacctcttctttg |
81 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||| | |||| ||||||||||||| |||||||||| |||| |
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| T |
13432 |
aatatgaagatagaggttcctcatgttgatgttaacttaaattggcttcagtaaatgatctcccaagacctcttatttg |
13510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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