View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4338_low_3 (Length: 397)
Name: NF4338_low_3
Description: NF4338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4338_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 46767293 - 46767663
Alignment:
| Q |
13 |
aatataattgagtaaagaaaaggaacaaaaaagaaattgaagttcattatatagattccaaaaactctcttgtgctgagttctctgtctatgtctgcatg |
112 |
Q |
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| T |
46767293 |
aatataattgagtaaagaaaaggaacaaaaaagaaattgaagttcattatatagattccaaaaactctcttgtgctgagttctctgtctatgtctgcatg |
46767392 |
T |
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| Q |
113 |
ataatttttgtactgataaagttggttttgacatcaaaatcaaatagtaaagctcttctttttactaataaggaacagtatttgagtatttaacaaacca |
212 |
Q |
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| T |
46767393 |
ataatttttgtactgataaagttggttttgacatcaaaatcaaatagtaaagctcttctttttactaataaggaacagtattcgagtatttaacaaacca |
46767492 |
T |
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| Q |
213 |
aaagaggcatgcaaatttggcgggaataataattgttggaggctctaatacaataaggccctacaactctttgaagatgctatttacattcctttcaatt |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46767493 |
aaagaggcatgcaattttggcgggaataataattgttggaggctctaatacaataaggccctacaactctttgaagatgctatttacattcctttcaatt |
46767592 |
T |
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| Q |
313 |
gctgctgctggtgtttacttttgactaggtggactttagctactttacattatcatctgttttgttgtttt |
383 |
Q |
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| T |
46767593 |
gctgctgctggtgtttacttttgactaggtggactttagctactttacattatcatctgttttgttgtttt |
46767663 |
T |
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