View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4339_high_1 (Length: 615)
Name: NF4339_high_1
Description: NF4339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4339_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 29136120 - 29136687
Alignment:
| Q |
1 |
tgacacaattttaaaatatttggaatgattttttattcagttacaataatattttaatagttatattataatttaa-gttatggtaagagtacaagtact |
99 |
Q |
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| T |
29136120 |
tgactcaattttaaaatatttggaatgattttttattcagttacaatgatattttaatatttatattataatttaaagttatggtaaaagtacaagtact |
29136219 |
T |
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| Q |
100 |
tggtttgtnnnnnnnnngtacaaagtacttggatatatccaataagtgttgaaattattatcagcgcaggtaccggtttgtgtacactaatcacgtatgt |
199 |
Q |
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| T |
29136220 |
tggtttgtaaaaaaaaagtacaa-gtacttggatatatccagtaagtgttgaaattattatcagcgcaggtaccggtttgtgtacactaatcacgtatgt |
29136318 |
T |
|
| Q |
200 |
tgctgtttagagtgcatgaccagcataagtctcatctctatttacaatatcacg-tttatttttgtgacaaatgtacactaaaaacttaaaatttcattt |
298 |
Q |
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| T |
29136319 |
tgctgtttagagtgcatgaccagcataagtctcatctctatgtacaatatcacgttttatttttgtgacaaatgtacactaaacacttaaaatttcattt |
29136418 |
T |
|
| Q |
299 |
tttatataagcaaaaacttatcaattggagtacacgagatgcttgaacccatatacatgtaaagaagaaactaaacaagaaataacattact-cac---- |
393 |
Q |
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| T |
29136419 |
tttatataagcaa--------caattggagtacacgagatgcttgaacccatatacatgtaaagaagaaactaaacaataaataacattactccacgcgt |
29136510 |
T |
|
| Q |
394 |
----ttatcaatttaagtgagttaatttatcttctttaaaataaaacactactccacaaattgactaaaatgacatattttggacgagtgagttttacca |
489 |
Q |
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| T |
29136511 |
ttcagtgccaatttaagtgagttaatttatcttctttaaaataaaacactactctacagattgactaaaatgacatattttggacgagtgagttttacca |
29136610 |
T |
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| Q |
490 |
attctagcggatttatttggaaaaaatattcatcgtttgtctctatttatcggttttgcaatattcagtgtttgcttat |
568 |
Q |
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| T |
29136611 |
attctagcggatttatttggaaaaaatattcattgtttgtctctatttatcag--ttacaatattcattgtttgcttat |
29136687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 3677345 - 3677305
Alignment:
| Q |
395 |
tatcaatttaagtgagttaatttatcttctttaaaataaaa |
435 |
Q |
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| T |
3677345 |
tatcaatttaagtgagttaatttagcttcttaaaaaaaaaa |
3677305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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