View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4339_high_10 (Length: 319)

Name: NF4339_high_10
Description: NF4339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4339_high_10
NF4339_high_10
[»] chr5 (5 HSPs)
chr5 (13-319)||(18425834-18426139)
chr5 (88-153)||(31694217-31694282)
chr5 (75-139)||(24323801-24323865)
chr5 (75-139)||(24360425-24360489)
chr5 (75-136)||(19143038-19143099)
[»] chr3 (4 HSPs)
chr3 (75-131)||(54374442-54374498)
chr3 (75-149)||(34420740-34420814)
chr3 (75-136)||(40272908-40272969)
chr3 (75-135)||(5173816-5173876)
[»] chr6 (6 HSPs)
chr6 (75-149)||(12889391-12889465)
chr6 (75-136)||(2166508-2166569)
chr6 (75-136)||(2178141-2178202)
chr6 (79-136)||(2755524-2755581)
chr6 (75-136)||(9161101-9161162)
chr6 (75-136)||(12222013-12222074)
[»] scaffold1176 (1 HSPs)
scaffold1176 (75-136)||(1681-1742)
[»] scaffold0254 (1 HSPs)
scaffold0254 (75-136)||(4135-4196)
[»] chr7 (6 HSPs)
chr7 (75-136)||(11617684-11617745)
chr7 (25-103)||(8148992-8149070)
chr7 (75-136)||(22065566-22065627)
chr7 (75-120)||(32233230-32233275)
chr7 (75-136)||(32758239-32758300)
chr7 (75-136)||(48123580-48123641)
[»] chr4 (8 HSPs)
chr4 (75-136)||(487231-487292)
chr4 (75-136)||(20224962-20225023)
chr4 (75-135)||(49938686-49938746)
chr4 (75-121)||(42164244-42164290)
chr4 (75-136)||(43035226-43035287)
chr4 (75-136)||(47528624-47528685)
chr4 (75-119)||(37494846-37494890)
chr4 (75-123)||(41018889-41018937)
[»] chr1 (8 HSPs)
chr1 (75-136)||(46248049-46248110)
chr1 (75-123)||(31272470-31272518)
chr1 (75-123)||(35005137-35005185)
chr1 (81-163)||(6983911-6983993)
chr1 (75-137)||(45812631-45812693)
chr1 (75-136)||(2435989-2436050)
chr1 (75-136)||(25468359-25468420)
chr1 (75-136)||(27474282-27474343)
[»] chr8 (4 HSPs)
chr8 (75-123)||(8484034-8484082)
chr8 (75-136)||(7136625-7136686)
chr8 (75-136)||(44781602-44781663)
chr8 (75-135)||(35105902-35105962)
[»] chr2 (5 HSPs)
chr2 (75-136)||(7214512-7214573)
chr2 (75-136)||(23145794-23145855)
chr2 (75-136)||(23557584-23557645)
chr2 (75-136)||(44521469-44521530)
chr2 (75-136)||(44604832-44604893)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 18426139 - 18425834
Alignment:
Q  13 gcagagttcgaaaaggggtctcaccattcgatgtattgtacgtaaccttactctannnnnnnacacaagaggttgttttcaagacttgaacctatgacat 112  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| |||||       ||||||||| ||||||||||||||| ||||| ||||||    
T  18426139 gcagagttcgaaaaggggtctcaccattcgatgtattgtacacaacctttctctatttttt-acacaagagattgttttcaagacttaaacctgtgacat 18426041  T
Q  113 ttcagtcacgtaataacaactttattcttgtgccaagactcttccttaaaatcgagtcgatgtgtggactcgatttcaagtccatacatagaaatcaacc 212  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18426040 ttcagtcacgtaataacaactttattgttgtgccaagactcttccttaaaatcgagtcgatgtgtggactcgatttcaagtccatacatagaaatcaact 18425941  T
Q  213 ccatgtatgtgcatattaatgctagctaaggttatgttaaggaacacaattgctatttacctctccgaactatgttctaaaccatatttttacgacttct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18425940 ccatgtatgtgcatattaatgctagctaaggttatgttaaggaacacaattgctatttacctctccgaactatgttctaaaccatatttttacgacttct 18425841  T
Q  313 aaaacgt 319  Q
    |||||||    
T  18425840 aaaacgt 18425834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 31694217 - 31694282
Alignment:
Q  88 ttttcaagacttgaacctatgacatttcagtcacgtaataacaactttattcttgtgccaagactc 153  Q
    ||||||||||||||||||||||| | |||||||||| | |||||||||| | ||| ||||| ||||    
T  31694217 ttttcaagacttgaacctatgacctatcagtcacgtgacaacaactttactgttgcgccaaaactc 31694282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 24323801 - 24323865
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaactttattc 139  Q
    |||||||||||||||| ||  |||||||| | |||||||||||||||   |||||||||||||||    
T  24323801 acacaagaggttgtttccagaacttgaacatttgacatttcagtcacacgataacaactttattc 24323865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 24360425 - 24360489
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaactttattc 139  Q
    |||||||||||||||| ||  |||||||| | |||||||||||||||   |||||||||||||||    
T  24360425 acacaagaggttgtttccagaacttgaacatttgacatttcagtcacacgataacaactttattc 24360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 19143038 - 19143099
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||| || ||||| |||||||| | ||||| ||||    
T  19143038 acacaagaggttgtttccaggacttgaacctgtggcattttagtcacgtgacaacaatttta 19143099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 54374442 - 54374498
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaa 131  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  54374442 acacaagaggttgtttccaagacttgaacctgtgacctttcagtcacgtaataacaa 54374498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 34420740 - 34420814
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaactttattcttgtgccaag 149  Q
    |||||||||| ||||| || ||||||||||  |||| |||||||||||| | |||||||||| | ||| ||||||    
T  34420740 acacaagaggctgtttccaggacttgaacccgtgacctttcagtcacgtgacaacaactttactgttgcgccaag 34420814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 40272908 - 40272969
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || |||||||||| ||||| || ||||||| | | ||||||||||    
T  40272908 acacaagaggttgtttccaggacttgaacccatgaccttccagtcacatgacaacaacttta 40272969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 5173816 - 5173876
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttt 135  Q
    |||||||||||||||| || ||||||||||  |||| |||||||||| | | |||||||||    
T  5173816 acacaagaggttgtttccaggacttgaacccgtgacctttcagtcacatgacaacaacttt 5173876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 12889465 - 12889391
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaactttattcttgtgccaag 149  Q
    |||||||||| |||||||||||||||||||| |||| ||||| |||||| | ||||||||||   ||||||||||    
T  12889465 acacaagaggctgttttcaagacttgaacctgtgacctttcactcacgtgacaacaactttaccgttgtgccaag 12889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 2166508 - 2166569
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||  |||| |||||||||| ||| ||||||||||    
T  2166508 acacaagaggttgtttccaggacttgaacccgtgacctttcagtcacataacaacaacttta 2166569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 2178141 - 2178202
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||  |||| |||||||||| ||| ||||||||||    
T  2178141 acacaagaggttgtttccaggacttgaacccgtgacctttcagtcacataacaacaacttta 2178202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 2755524 - 2755581
Alignment:
Q  79 aagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||| ||||| ||||||||||||||| ||| |||||||||| | | ||||||||||    
T  2755524 aagaggatgtttgcaagacttgaacctacgacctttcagtcacatgacaacaacttta 2755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 9161162 - 9161101
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||| ||||| || ||||||||||| |||| |||||||||| | | ||||||||||    
T  9161162 acacaagaggctgtttccaggacttgaacctgtgacctttcagtcacatgacaacaacttta 9161101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 12222013 - 12222074
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||| ||||| |||||||||||||  |||| |||||||||| | | ||||||||||    
T  12222013 acacaagaggctgtttccaagacttgaacccgtgacctttcagtcacatgacaacaacttta 12222074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 1681 - 1742
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||| | | ||||||||||    
T  1681 acacaagaggttgttttcaggacttgaacccatgacctttcagtcacatgacaacaacttta 1742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 4196 - 4135
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||  |||| |||||||||| ||| ||||||||||    
T  4196 acacaagaggttgtttccaggacttgaacccgtgacctttcagtcacataacaacaacttta 4135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 11617684 - 11617745
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||| |||| |||||||||| | | ||||||||||    
T  11617684 acacaagaggttgtttccaggacttgaacctgtgacctttcagtcacatgacaacaacttta 11617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 8148992 - 8149070
Alignment:
Q  25 aaggggtctcaccattcgatgtattgtacgtaaccttactctannnnnnnacacaagaggttgttttcaagacttgaac 103  Q
    |||||||| ||||||| | ||||||||||| |||||||| |||       ||||||||||| ||||||| |||||||||    
T  8148992 aaggggtcccaccatttggtgtattgtacgcaaccttaccctattttttaacacaagaggtagttttcaggacttgaac 8149070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 22065627 - 22065566
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| ||| ||||||||  ||||| ||||| |||||| | ||||||||||    
T  22065627 acacaagaggttgtttccaaaacttgaactcatgacttttcaatcacgtgacaacaacttta 22065566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 32233230 - 32233275
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtca 120  Q
    |||||||||||||||| || |||||||||| ||||| |||||||||    
T  32233230 acacaagaggttgtttccaggacttgaacccatgacctttcagtca 32233275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 32758300 - 32758239
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||| ||||| || ||||||||||| |||| |||||||||| | | ||||||||||    
T  32758300 acacaagaggctgtttccaggacttgaacctgtgacctttcagtcacatgacaacaacttta 32758239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 48123580 - 48123641
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||| ||||| || |||||||||| ||||| |||||| ||| | ||||||||||||    
T  48123580 acacaagaggctgtttccaggacttgaacccatgacctttcagacacatgataacaacttta 48123641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 487231 - 487292
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| |||||||||||||  |||| |||||||||| | | ||||||||||    
T  487231 acacaagaggttgtttccaagacttgaacccgtgacctttcagtcacatgacaacaacttta 487292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 20225023 - 20224962
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || |||||||||| ||||| |||||||||| | | ||||||||||    
T  20225023 acacaagaggttgtttccaggacttgaacccatgacctttcagtcacatgacaacaacttta 20224962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 49938686 - 49938746
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttt 135  Q
    |||||||||| ||||| || ||||||||||| |||| |||||||||||| | |||||||||    
T  49938686 acacaagaggctgtttccaggacttgaacctgtgacctttcagtcacgtgacaacaacttt 49938746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 42164244 - 42164290
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcac 121  Q
    |||||||||||||||| |||||||||||||  |||| ||||||||||    
T  42164244 acacaagaggttgtttccaagacttgaacccgtgacctttcagtcac 42164290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 43035287 - 43035226
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| |  ||||||||||  |||| |||||||||||| | ||||||||||    
T  43035287 acacaagaggttgtttcctggacttgaacccgtgacctttcagtcacgtgacaacaacttta 43035226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 47528624 - 47528685
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||| ||||| || ||||||||||| |||| |||||||||| | | ||||||||||    
T  47528624 acacaagaggctgtttccaggacttgaacctgtgacctttcagtcacatgacaacaacttta 47528685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 37494890 - 37494846
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtc 119  Q
    |||||||||||||||| || ||||||||||| |||| ||||||||    
T  37494890 acacaagaggttgtttccaggacttgaacctgtgacctttcagtc 37494846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 41018889 - 41018937
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgt 123  Q
    |||||||||||||||| || ||||||||||  |||| ||||||||||||    
T  41018889 acacaagaggttgtttccaggacttgaacccgtgacctttcagtcacgt 41018937  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 46248049 - 46248110
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||| | | ||||||||||    
T  46248049 acacaagaggctgtttccaagacttgaacccgtgacatttcagtcacatgacaacaacttta 46248110  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 31272470 - 31272518
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgt 123  Q
    |||||||||||||||| || ||||||||||| |||| ||||||||||||    
T  31272470 acacaagaggttgtttccaggacttgaacctgtgacctttcagtcacgt 31272518  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 35005185 - 35005137
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgt 123  Q
    |||||||||| |||||||||||||||||||  |||| ||||||||||||    
T  35005185 acacaagaggctgttttcaagacttgaacccgtgacctttcagtcacgt 35005137  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 163
Target Start/End: Original strand, 6983911 - 6983993
Alignment:
Q  81 gaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaactttattcttgtgccaagactcttccttaaaa 163  Q
    |||| ||||| || ||||||||||| |||| |||||||||||| | ||||||||||   ||| |||||| |||| ||||||||    
T  6983911 gaggctgtttccaggacttgaacctgtgacctttcagtcacgtgacaacaactttaccattgcgccaaggctctcccttaaaa 6983993  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 45812631 - 45812693
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaactttat 137  Q
    |||||||||  |||||||| ||||||||||| |||| |||||||||| | | |||||||||||    
T  45812631 acacaagagactgttttcaggacttgaacctgtgacctttcagtcacatgacaacaactttat 45812693  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 2435989 - 2436050
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    ||||| |||||||||| || ||||||||||  |||| |||||||||||| | ||||||||||    
T  2435989 acacaggaggttgtttccaggacttgaacccgtgacctttcagtcacgtgacaacaacttta 2436050  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 25468359 - 25468420
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || |||||||||| ||||| ||||| |||| | | ||||||||||    
T  25468359 acacaagaggttgtttccaggacttgaacccatgacctttcaatcacatgacaacaacttta 25468420  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 27474343 - 27474282
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||  ||||| |||||||||||||| |||| |||||||||| | | ||||||||||    
T  27474343 acacaagagactgtttccaagacttgaacctgtgacctttcagtcacatgacaacaacttta 27474282  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 8484034 - 8484082
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgt 123  Q
    |||||||||||||||| || |||||||||| ||||||||| ||||||||    
T  8484034 acacaagaggttgtttccaggacttgaacccatgacatttaagtcacgt 8484082  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 7136625 - 7136686
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || |||||||||| ||||| || ||||||| | | ||||||||||    
T  7136625 acacaagaggttgtttccaggacttgaacccatgaccttccagtcacatgacaacaacttta 7136686  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 44781602 - 44781663
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||  |||  |||||||||||| | ||||||||||    
T  44781602 acacaagaggttgtttccaggacttgaacccgtgaactttcagtcacgtgacaacaacttta 44781663  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 35105962 - 35105902
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttt 135  Q
    |||||||||||||||| || ||||||||||  |||| |||||| ||||| | |||||||||    
T  35105962 acacaagaggttgtttccaggacttgaacccgtgacctttcagccacgtgacaacaacttt 35105902  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 7214573 - 7214512
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||  ||||| ||||||||||||| ||||| |||||||||| | | ||||||||||    
T  7214573 acacaagagactgtttccaagacttgaacccatgacctttcagtcacatgacaacaacttta 7214512  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 23145794 - 23145855
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||  |||||||||||||||||||  |||| |||||||||||  | ||||||||||    
T  23145794 acacaagagtctgttttcaagacttgaacccgtgacctttcagtcacgctacaacaacttta 23145855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 23557584 - 23557645
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||  |||||||||||||||||||  |||| |||||||||||  | ||||||||||    
T  23557584 acacaagagtctgttttcaagacttgaacccgtgacctttcagtcacgctacaacaacttta 23557645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 44521469 - 44521530
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    ||||||||| |||||| ||||| ||||||   |||| |||||||||||| ||||||||||||    
T  44521469 acacaagagattgtttccaagatttgaacgcgtgacctttcagtcacgtgataacaacttta 44521530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 44604893 - 44604832
Alignment:
Q  75 acacaagaggttgttttcaagacttgaacctatgacatttcagtcacgtaataacaacttta 136  Q
    |||||||||||||||| || ||||||||||| |||| || ||||||| | | ||||||||||    
T  44604893 acacaagaggttgtttccaggacttgaacctgtgaccttccagtcacatgacaacaacttta 44604832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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