View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4339_high_11 (Length: 306)
Name: NF4339_high_11
Description: NF4339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4339_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 25048851 - 25049146
Alignment:
| Q |
11 |
agaccttgcatatattttttgggtggtatccgggttccttatcaactgagttaagctcatgggaacgaatgacaattgtgattgaacatgataaaagtag |
110 |
Q |
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| T |
25048851 |
agaccttgcatatattttttgggtggtatccgggatccttatcaactgagttaagctcatgggaacgaatgacaattgtgattgaacatgataaaagtag |
25048950 |
T |
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| Q |
111 |
tttccagaatttaggattaacccaatatttggattaaacatgataaaacgacacaattttaatgaatgaaaccctatacatcaattcttctgacatcatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25048951 |
tttccagaatttaggattaacccaatatttggattaaacatgataaaacaacacaattttaatgaatgaaaccctatacatcaattcttctgacatcatg |
25049050 |
T |
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| Q |
211 |
cgaataaaagaaaaatgtcatattttagggtgttcatgtcattcaagcaaacaatagccataaactctctaactttatcccattataaaatacaaa |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25049051 |
cgaataaaagaaaaatgtcatatttttgggtgttcatgccattcaagcaaacaatagccataaactctctaactttatcccattataaaatacaaa |
25049146 |
T |
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