View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4339_high_1_N (Length: 754)

Name: NF4339_high_1_N
Description: NF4339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4339_high_1_N
NF4339_high_1_N
[»] chr3 (1 HSPs)
chr3 (59-725)||(34899310-34899975)


Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 59 - 725
Target Start/End: Original strand, 34899310 - 34899975
Alignment:
Q  59 tgtgactcttttttcttttaaatttatcagaagagtcttgctcaattttaaaaatcagggctatacaattcatcaatgaannnnnnnncccttttgtttt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||||||||||    
T  34899310 tgtgactcttttttcttttaaatttatcagaagagtcttgctcaattctaaaaatcagggctatacaattcatcaatgaattttttttcccttttgtttt 34899409  T
Q  159 gacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgactt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899410 gacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgactt 34899509  T
Q  259 cttcaacnnnnnnnntctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaa 358  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899510 cttcaacaaaaaaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaa 34899609  T
Q  359 aaatgttcttagttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgtt 458  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34899610 aaatgttcttagttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgtt 34899708  T
Q  459 ataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttca 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899709 ataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttca 34899808  T
Q  559 tgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaag 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899809 tgtttggtgagaatggaaggaaaattttgagactataaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaag 34899908  T
Q  659 aactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899909 aactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 34899975  T

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