View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4339_high_3 (Length: 436)
Name: NF4339_high_3
Description: NF4339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4339_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 17477950 - 17477525
Alignment:
| Q |
14 |
aggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagctaaagtggatcagttagatagtaaaggt--cgagtgagatgaagaggt |
111 |
Q |
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| T |
17477950 |
aggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagctaaattggatcagttagatagtaaagggaccgagttagtcgaagaggt |
17477851 |
T |
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| Q |
112 |
acgtggctatttatcttcttatggaagcctgtgtgatcgaatatcgtgcttcgcttcaaaacttcatattgcagccatacctcatgtgaggaaaatgaaa |
211 |
Q |
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| T |
17477850 |
acgtggctatttatcttcttatggaagcctgtgtgatcgaatatcatgcttcacttcaaaacttcatattgcagccatacctcatgtgaggaaaatgaaa |
17477751 |
T |
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| Q |
212 |
attaaaactgaaattcaaagctgctctatgtaagttgcaagctgcaactttcccatagatttta-cggnnnnnnnactgtttctcatgtcagatcgaacc |
310 |
Q |
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| T |
17477750 |
attaaaactgaaattcaaagttgctctatgttagttgcaagctgcaactttcccatagattttaccgttttttttactgtttctcatgtcagatcgaacc |
17477651 |
T |
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| Q |
311 |
ttgttctccagactgccatgtagaatgtcgtttgagggattgtttttgcattgcttattgtgatagtgaatgacatattaatgaattattatgattgcat |
410 |
Q |
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| T |
17477650 |
ttgttctccagactgccatgtagaatgtcagttgagggattgtttttgcattacttattgtgatagtgaatgacaaataaatgaattattatgcttgcat |
17477551 |
T |
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| Q |
411 |
tgctgcagtttcataaggatgctaac |
436 |
Q |
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| T |
17477550 |
tgctgcagtttcataaggatgctaac |
17477525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 36888916 - 36888645
Alignment:
| Q |
14 |
aggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagctaaagtggatcagttagatagtaaaggtcgagtga--gatgaagaggt |
111 |
Q |
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| T |
36888916 |
aggtggatgcggtaaatagtagaattaccttggcaaaagaatctgcaacaaaaaaagtggatcagttagatagtaaatgcgaagagatagaaaaagaggt |
36888817 |
T |
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| Q |
112 |
acgtggctatttatcttcttatggaagcctgtgtgatcgaatat---------cgtgcttcgcttcaaaacttcatattgcagccatacctcatgtgagg |
202 |
Q |
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| T |
36888816 |
atgtggccatttatcctattttggaagcatgtgtggtctaaaaattctaagaccctatttggcttcaaaatttcaaattgcagccatacc--ataatagg |
36888719 |
T |
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| Q |
203 |
aaaatgaaaattaaaactgaaattcaaagctgctctatgtaagttgcaagctgcaactttcccatagattttac |
276 |
Q |
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| T |
36888718 |
aaaatggaaattagaactgagattcaaagttgctctatgtcagttgcaagttgcaactttcacatagattttac |
36888645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 36908847 - 36908924
Alignment:
| Q |
199 |
gaggaaaatgaaaattaaaactgaaattcaaagctgctctatgtaagttgcaagctgcaactttcccatagattttac |
276 |
Q |
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|||| ||||||||||| |||| |||||||||| |||||||||| ||||||||| |||||||||| |||||| ||||| |
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| T |
36908847 |
gagggaaatgaaaattgtaactcaaattcaaagttgctctatgtcagttgcaagttgcaactttcgcatagactttac |
36908924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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