View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4340-Insertion-12 (Length: 110)
Name: NF4340-Insertion-12
Description: NF4340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4340-Insertion-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 36311704 - 36311803
Alignment:
| Q |
11 |
agcatcaaatgcaaagcaatactatcaatgagcctcctcagcacaatcttccaataggcaattaatcttgccttcaagtcaaaggcctgattcaacacat |
110 |
Q |
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| T |
36311704 |
agcatcaaatgcaaagcaatactatcaatgagcctcctcagtacaatcttccaataggcaattaatcttgccttcaagtcaaaggcctgattcaacacat |
36311803 |
T |
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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 36289230 - 36289313
Alignment:
| Q |
17 |
aaatgcaaagcaatactatcaatgagcctcctcagcacaatcttccaataggcaattaatcttgccttcaagtcaaaggcctga |
100 |
Q |
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| T |
36289230 |
aaatgcagagctatgctgtcaatgagcctccttaaaacaatcttccaataagcaatcatcctagccttcaaatcaaaagcctga |
36289313 |
T |
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