View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4340-Insertion-2 (Length: 122)

Name: NF4340-Insertion-2
Description: NF4340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4340-Insertion-2
NF4340-Insertion-2
[»] chr3 (12 HSPs)
chr3 (1-122)||(28049428-28049549)
chr3 (10-122)||(28179321-28179433)
chr3 (1-122)||(27911281-27911402)
chr3 (1-122)||(11410248-11410369)
chr3 (2-64)||(27462770-27462832)
chr3 (5-122)||(28081164-28081281)
chr3 (1-42)||(27973161-27973202)
chr3 (5-43)||(27433867-27433905)
chr3 (10-122)||(28483139-28483251)
chr3 (10-37)||(28000403-28000430)
chr3 (10-37)||(28470907-28470934)
chr3 (10-37)||(28511953-28511980)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 9e-37; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 28049549 - 28049428
Alignment:
Q  1 ctttcaaaggtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagattttgaagaataaaggtctcaaatgctggaagatgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||  ||||||  |||||||| ||| |||||||||||||    
T  28049549 ctttcaaaggtggaaatgttgtgtgatattgtttgggacacatgccgactaaacttggcagattgcgaagaacgaaggtctccaatactggaagatgaag 28049450  T
Q  101 atgaatctcaatgtggttttga 122  Q
    |||||||| | |||||||||||    
T  28049449 atgaatctgagtgtggttttga 28049428  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 28179433 - 28179321
Alignment:
Q  10 gtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagattttgaagaataaaggtctcaaatgctggaagatgaagatgaatctc 109  Q
    |||||||||| ||||||||||||||||||||||| | |||||||  ||||||||| |||||||  |||||||| |||||||||||||||||| |||||||    
T  28179433 gtggaaatgtcgtgtgatattgtttgggacacatgctgactaaacttggcagattgtgaagaacgaaggtctccaatgctggaagatgaagaggaatctc 28179334  T
Q  110 aatgtggttttga 122  Q
    | |||||||||||    
T  28179333 agtgtggttttga 28179321  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 27911402 - 27911281
Alignment:
Q  1 ctttcaaaggtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagattttgaagaataaaggtctcaaatgctggaagatgaag 100  Q
    |||||||  ||||||||| |||| |||||||||| ||| ||||||||||||||  |||||||||   ||||| ||||||||| |||| |  |||||||||    
T  27911402 ctttcaagtgtggaaatgatgtgcgatattgttttggagacattccgactaaacttggcagattccaaagaacaaaggtctccaatgttaaaagatgaag 27911303  T
Q  101 atgaatctcaatgtggttttga 122  Q
    ||||||||||||||||||||||    
T  27911302 atgaatctcaatgtggttttga 27911281  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11410369 - 11410248
Alignment:
Q  1 ctttcaaaggtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagattttgaagaataaaggtc-tcaaatgctggaagatgaa 99  Q
    ||||||||||||||||||||||| ||||||||| ||||||||   ||||||||  ||| ||||| | ||| ||| ||  | || ||| ||||||||||||    
T  11410369 ctttcaaaggtggaaatgttgtgcgatattgttcgggacacacggcgactaaacttggaagattctcaag-atagagaccttccaatactggaagatgaa 11410271  T
Q  100 gatgaatctcaatgtggttttga 122  Q
    | |||||||||| ||||||||||    
T  11410270 ggtgaatctcaacgtggttttga 11410248  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 27462770 - 27462832
Alignment:
Q  2 tttcaaaggtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagatt 64  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||  |||||||||    
T  27462770 tttcaaaggtggaaatgttatgtgacattgtttgggacatattgcgactaaacttggcagatt 27462832  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 28081281 - 28081164
Alignment:
Q  5 caaaggtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagattttgaaga-ataaaggtctcaaatgctggaagatgaagatg 103  Q
    |||||||||||||||||| |||||||||||| || ||||||| ||||||  |||||||||   |||| | | |  | || |||||||||||| |||||||    
T  28081281 caaaggtggaaatgttgtctgatattgtttgcgagacattccaactaaacttggcagattccaaagagagagacat-tccaatgctggaagacgaagatg 28081183  T
Q  104 aatctcaatgtggttttga 122  Q
    ||||||| |||||||||||    
T  28081182 aatctcagtgtggttttga 28081164  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27973202 - 27973161
Alignment:
Q  1 ctttcaaaggtggaaatgttgtgtgatattgtttgggacaca 42  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  27973202 ctttcaaaggtggaaaagttgtgtgatattgtttggggcaca 27973161  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 27433867 - 27433905
Alignment:
Q  5 caaaggtggaaatgttgtgtgatattgtttgggacacat 43  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  27433867 caaaggtggaaatgttgtgcgatattgtttggtacacat 27433905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 28483139 - 28483251
Alignment:
Q  10 gtggaaatgttgtgtgatattgtttgggacacattccgactaaatgtggcagattttgaagaataaaggtc-tcaaatgctggaagatgaagatgaatct 108  Q
    ||||||||||||||||||||||||||||  |  |  | ||||||  ||||||||| | ||| ||| || || || |||||||||||||||||||||||||    
T  28483139 gtggaaatgttgtgtgatattgtttggggtaattggcaactaaacttggcagattctcaag-atagagatcttccaatgctggaagatgaagatgaatct 28483237  T
Q  109 caatgtggttttga 122  Q
     | ||| |||||||    
T  28483238 tagtgttgttttga 28483251  T

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Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 37
Target Start/End: Complemental strand, 28000430 - 28000403
Alignment:
Q  10 gtggaaatgttgtgtgatattgtttggg 37  Q
    ||||||||||||||||||||||||||||    
T  28000430 gtggaaatgttgtgtgatattgtttggg 28000403  T

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Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 37
Target Start/End: Original strand, 28470907 - 28470934
Alignment:
Q  10 gtggaaatgttgtgtgatattgtttggg 37  Q
    ||||||||||||||||||||||||||||    
T  28470907 gtggaaatgttgtgtgatattgtttggg 28470934  T

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Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 37
Target Start/End: Original strand, 28511953 - 28511980
Alignment:
Q  10 gtggaaatgttgtgtgatattgtttggg 37  Q
    ||||||||||||||||||||||||||||    
T  28511953 gtggaaatgttgtgtgatattgtttggg 28511980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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