View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4340-Insertion-3 (Length: 185)

Name: NF4340-Insertion-3
Description: NF4340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4340-Insertion-3
NF4340-Insertion-3
[»] chr7 (1 HSPs)
chr7 (1-185)||(13052755-13052941)
[»] chr4 (4 HSPs)
chr4 (3-61)||(164814-164872)
chr4 (1-96)||(103852-103944)
chr4 (119-185)||(164965-165028)
chr4 (143-185)||(104009-104051)
[»] scaffold0013 (2 HSPs)
scaffold0013 (136-182)||(92219-92265)
scaffold0013 (1-37)||(92420-92456)
[»] chr8 (3 HSPs)
chr8 (1-59)||(5722196-5722254)
chr8 (1-59)||(5669932-5669990)
chr8 (1-37)||(5691831-5691867)
[»] chr3 (1 HSPs)
chr3 (1-40)||(12137412-12137451)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 13052755 - 13052941
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataaccatgggggctgtagaaaaggtaagcatcgtcatggcaattaaacatattgattatttagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13052755 atatccactacgaggatgagaatagtcgatacataaccatgggggctgtagaaaaggtaagcatcgtcatggcaattaaacatattgattatttagtttt 13052854  T
Q  101 ccattgaaaa--taaatcatttcaaatattccattattaacatgtatatatttatcaggctttatgtatgcttgcttgctgggtgga 185  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  13052855 ccattgaaaaataaaatcatttcaaatattccattattaacatgtatatagttatcaggctttatgtatgcttgcttgttgggtgga 13052941  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 164814 - 164872
Alignment:
Q  3 atccactacgaggatgagaatagtcgatacataaccatgggggctgtagaaaaggtaag 61  Q
    |||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||    
T  164814 atccactacgaggatgagaatagtcgatacataaccattgcgtctgtggaaaaggtaag 164872  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 103852 - 103944
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataaccatgggggctgtagaaaaggtaagcatcgtcatggcaattaaacatattgattatttag 96  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||  ||| ||||||||||| |    ||| |||||||| ||||||||||||||||    
T  103852 atatccactacgaggatgagaacagtcgatacctaaccattgggtgtgtggaaaaggtaagta---gcatagcaattaagcatattgattatttag 103944  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 164965 - 165028
Alignment:
Q  119 ttcaaatattccattattaacatgtatatatttatcaggctttatgtatgcttgcttgctgggtgga 185  Q
    ||||||||||||||||   |||| ||||||||||| ||| |||||||||||||||||| ||||||||    
T  164965 ttcaaatattccatta---acatttatatatttataaggttttatgtatgcttgcttgttgggtgga 165028  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 104009 - 104051
Alignment:
Q  143 tatatatttatcaggctttatgtatgcttgcttgctgggtgga 185  Q
    |||||||||||||||  ||||||||||||||||| ||||||||    
T  104009 tatatatttatcaggtattatgtatgcttgcttgttgggtgga 104051  T

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Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 92265 - 92219
Alignment:
Q  136 taacatgtatatatttatcaggctttatgtatgcttgcttgctgggt 182  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  92265 taacatgtatatatttatcaggctttatgtatgcttgcctgttgggt 92219  T

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Target: scaffold0013; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 92456 - 92420
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataac 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  92456 atattcactacgaggatgagaatagtcgatacataac 92420  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5722254 - 5722196
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataaccatgggggctgtagaaaaggta 59  Q
    |||||||||| || |||||||||||||||||||||||||| |||  ||| |||||||||    
T  5722254 atatccactatgaagatgagaatagtcgatacataaccattgggtgtgtggaaaaggta 5722196  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5669990 - 5669932
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataaccatgggggctgtagaaaaggta 59  Q
    |||||||||| || ||| |||||||||||||||||||||| |||  ||| |||||||||    
T  5669990 atatccactatgaagataagaatagtcgatacataaccattgggtgtgtggaaaaggta 5669932  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5691867 - 5691831
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataac 37  Q
    |||||||||| || |||||||||||||||||||||||    
T  5691867 atatccactatgaagatgagaatagtcgatacataac 5691831  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12137451 - 12137412
Alignment:
Q  1 atatccactacgaggatgagaatagtcgatacataaccat 40  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  12137451 atatccactatgaagatgagaatagtcgatacataaccat 12137412  T

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