View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4340-Insertion-6 (Length: 278)
Name: NF4340-Insertion-6
Description: NF4340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4340-Insertion-6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 43514216 - 43514493
Alignment:
| Q |
1 |
ataaccatactaggagatgcaacataacattgattaacagataagaatcacttgatatttatctataacagaaagagaaaatgacatatggactaacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43514216 |
ataaccatactaggagatgcaacataacattgattaacagataagaatcacttgatatttatctataacagaaagagaaaatgacatatggactaacctt |
43514315 |
T |
|
| Q |
101 |
agaaaatccattcacggttagagttttaccccacatccctggtaaagatgcaaagctagtgtgtgttgctggtgcataaattatgtgttcataaatttca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43514316 |
agaaaatccattcacggttagagttttaccccacatccccggtaaagatgcaaagctagtgtgtgttgctggtgcataaattatgtgttcataaatttca |
43514415 |
T |
|
| Q |
201 |
tcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatgaacacattgaagcccttg |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43514416 |
tcagagataacctgcacaaaacaacttttaagattttaagtggaactacatttaaagatgaacacattgaagcccttg |
43514493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 38103912 - 38104091
Alignment:
| Q |
70 |
agaaagagaaaatgacatatggactaaccttagaaaatccattcacggttagagttttaccccacatccctggtaaagatgcaaagctagtgtgtgttgc |
169 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| ||||||||||||||| || |||||| | ||||||||||||||||| || |||||||| |
|
|
| T |
38103912 |
agaaagagaacatgacatacaaactaaccttagaaaatccgttcacggttagagttctattccacattctaggtaaagatgcaaagcttgtatgtgttgc |
38104011 |
T |
|
| Q |
170 |
tggtgcataaattatgtgttcataaatttcatcagagataacctgcacaaaacaacttttaagattttaagtggaactac |
249 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
38104012 |
tggggcataaattatgtgttcataaatttcatcagagataacctgcacaaaacaactattaagatcttaagaggaactac |
38104091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University