View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4340_high_2 (Length: 349)
Name: NF4340_high_2
Description: NF4340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4340_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 8249455 - 8249127
Alignment:
| Q |
16 |
atttataaggaggggtccagaatttggaggatgccatcgatattatcttattttctgactcatttcttggaccaaactgtgatatcaatactac-tatag |
114 |
Q |
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| T |
8249455 |
atttataaggaggggtccagaatttggaggatgccatcgatattatcttattttctgactcatttcttggaccaaactgtgatatcaatactacctatag |
8249356 |
T |
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| Q |
115 |
aaaaaacctgtgacagtgata-caatacactggtccaatattttcttccgatggttgctttatattttatttcaaactaatctttctataagagtagcaa |
213 |
Q |
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| T |
8249355 |
aaaaaacctgtgacagtgatatcaatacactggtccaatattttcttccgatggttgctttatattttatttcaaactactctttctataagagtagcaa |
8249256 |
T |
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| Q |
214 |
tattgatcaaagagtagcgatttgttaacttcaaagaagaagnnnnnnngagtggatacgaaaagactaattttagacacaaaattgatttttacatgca |
313 |
Q |
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| T |
8249255 |
tattgatcaaagagtagcgatttgttaacttcaaagaagaagaaaaaaagagtggatacgaaaagactaattttagacacaaaattgatttttacatgca |
8249156 |
T |
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| Q |
314 |
tgtttgagggatgtcgattagaataattt |
342 |
Q |
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| T |
8249155 |
tgtttgagggatgtcgattagaataattt |
8249127 |
T |
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