View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4341-Insertion-2 (Length: 152)

Name: NF4341-Insertion-2
Description: NF4341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4341-Insertion-2
NF4341-Insertion-2
[»] chr8 (20 HSPs)
chr8 (4-128)||(1083288-1083412)
chr8 (55-152)||(40502185-40502282)
chr8 (55-148)||(40502401-40502494)
chr8 (58-152)||(1083057-1083151)
chr8 (55-152)||(24919881-24919978)
chr8 (4-60)||(40502663-40502719)
chr8 (94-152)||(24919457-24919515)
chr8 (94-152)||(24920093-24920151)
chr8 (55-152)||(24919669-24919766)
chr8 (4-60)||(24921028-24921084)
chr8 (81-152)||(1082637-1082708)
chr8 (81-152)||(1082847-1082918)
chr8 (55-122)||(31391151-31391218)
chr8 (55-122)||(31391575-31391642)
chr8 (55-121)||(31391363-31391429)
chr8 (55-122)||(31392000-31392067)
chr8 (4-48)||(31390955-31390999)
chr8 (55-122)||(31391787-31391855)
chr8 (55-122)||(24920757-24920824)
chr8 (55-120)||(24920336-24920401)
[»] chr6 (11 HSPs)
chr6 (55-152)||(15342080-15342177)
chr6 (55-148)||(15341872-15341965)
chr6 (55-152)||(15341656-15341753)
chr6 (55-152)||(19846247-19846344)
chr6 (55-149)||(19846035-19846129)
chr6 (4-60)||(15342345-15342401)
chr6 (58-152)||(19845831-19845925)
chr6 (85-152)||(14524065-14524132)
chr6 (4-60)||(19845570-19845626)
chr6 (94-152)||(15341445-15341503)
chr6 (111-152)||(2430660-2430701)
[»] chr2 (3 HSPs)
chr2 (55-152)||(11355468-11355565)
chr2 (72-152)||(11355273-11355353)
chr2 (111-152)||(1400734-1400775)
[»] chr3 (15 HSPs)
chr3 (55-152)||(25010492-25010589)
chr3 (72-149)||(25010298-25010375)
chr3 (55-152)||(34164268-34164365)
chr3 (55-152)||(34164480-34164577)
chr3 (4-60)||(4267663-4267719)
chr3 (4-60)||(13819000-13819056)
chr3 (55-122)||(4268345-4268412)
chr3 (55-121)||(4268769-4268835)
chr3 (57-122)||(12212147-12212212)
chr3 (55-122)||(13818731-13818798)
chr3 (55-141)||(12211509-12211595)
chr3 (57-122)||(12211723-12211788)
chr3 (55-120)||(13815382-13815447)
chr3 (55-122)||(4268558-4268625)
chr3 (111-142)||(27335532-27335563)
[»] chr1 (17 HSPs)
chr1 (55-152)||(24708016-24708113)
chr1 (55-141)||(17227654-17227740)
chr1 (58-152)||(29497069-29497163)
chr1 (4-60)||(29496808-29496864)
chr1 (55-152)||(17227442-17227539)
chr1 (4-60)||(23675853-23675909)
chr1 (4-60)||(19148799-19148855)
chr1 (81-152)||(29497302-29497373)
chr1 (55-122)||(17225148-17225215)
chr1 (55-122)||(19148106-19148173)
chr1 (55-122)||(23675160-23675227)
chr1 (55-121)||(19147683-19147749)
chr1 (103-152)||(17227280-17227328)
chr1 (4-60)||(24707787-24707847)
chr1 (108-152)||(38244809-38244853)
chr1 (55-122)||(19147893-19147960)
chr1 (55-122)||(23674947-23675014)
[»] scaffold0012 (2 HSPs)
scaffold0012 (55-145)||(142299-142389)
scaffold0012 (58-152)||(142078-142172)
[»] chr7 (30 HSPs)
chr7 (4-60)||(41549199-41549255)
chr7 (55-122)||(22143610-22143677)
chr7 (55-122)||(22143822-22143889)
chr7 (55-122)||(22144034-22144101)
chr7 (55-122)||(22144246-22144313)
chr7 (55-122)||(22144457-22144524)
chr7 (55-122)||(22146415-22146482)
chr7 (55-122)||(22146627-22146694)
chr7 (55-122)||(22146839-22146906)
chr7 (55-122)||(22147051-22147118)
chr7 (55-122)||(22147263-22147330)
chr7 (55-122)||(22147475-22147542)
chr7 (55-122)||(22147899-22147966)
chr7 (55-122)||(22213219-22213286)
chr7 (55-122)||(22213431-22213498)
chr7 (55-122)||(22213852-22213919)
chr7 (55-122)||(22214064-22214131)
chr7 (55-122)||(22214276-22214343)
chr7 (55-122)||(22214488-22214555)
chr7 (55-122)||(22214912-22214979)
chr7 (55-122)||(22215124-22215191)
chr7 (55-122)||(22147687-22147754)
chr7 (55-122)||(22148111-22148178)
chr7 (55-122)||(22213007-22213074)
chr7 (55-122)||(22214700-22214767)
chr7 (55-122)||(41549881-41549948)
chr7 (55-121)||(12490914-12490980)
chr7 (62-122)||(22212802-22212862)
chr7 (55-122)||(22213643-22213709)
chr7 (55-122)||(41550094-41550161)
[»] chr4 (3 HSPs)
chr4 (4-60)||(55042499-55042555)
chr4 (55-122)||(55043181-55043248)
chr4 (55-122)||(55043394-55043461)
[»] scaffold0186 (3 HSPs)
scaffold0186 (4-60)||(27693-27749)
scaffold0186 (56-122)||(27952-28018)
scaffold0186 (55-122)||(28587-28654)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 2e-62; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 1083412 - 1083288
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1083412 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggt 1083313  T
Q  104 aaactagccaaatatatggtttgtg 128  Q
    ||||||| |||||||||||||||||    
T  1083312 aaactagtcaaatatatggtttgtg 1083288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 40502282 - 40502185
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  40502282 ttatgtgttcgattcgcctaaaacaagattatttatacttgggaaagataaactagccaaatatatggtctgtgtgaccacattttttaaggtgcgtg 40502185  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 40502494 - 40502401
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtg 148  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  40502494 ttatgtgtttgattcgcttaaaacaagattatttatacttgggaaagataaactagccaaatatatggtctgtgtgaccacattttttaaggtg 40502401  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 1083151 - 1083057
Alignment:
Q  58 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||| | |||||  ||||||||||||| |||||||| ||||||||||| |||||| || ||||||||||||||||||||| ||||||    
T  1083151 tgtgttcgattcacctaaaatgagattatttatacctgggaaagttaaactagccagatatatagtctgtgtaaccacattttttaagatgcgtg 1083057  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 24919978 - 24919881
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||| |||||||| ||||||||  ||||| |||||  |||||||| ||||||| ||||||||||| | ||||| ||||||||||||||||||||||    
T  24919978 ttatgtcttcgattcacttaaaacgggattagttatatctgggaaagataaactaaccaaatatatgttctgtgtgaccacattttttaaggtgcgtg 24919881  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 40502719 - 40502663
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40502719 agttactaacattgttgaactatcctgcagtttaatgagtcattctgcatgttatgt 40502663  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 24919515 - 24919457
Alignment:
Q  94 tgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  24919515 tgggaaagataaactagccaaatatatggtctgtgttaccacattttttaagatgcgtg 24919457  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 24920151 - 24920093
Alignment:
Q  94 tgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  24920151 tgggaaagataaactagccaaatatatgttatgtgtgaccacattttttaaggtgcgtg 24920093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 24919766 - 24919669
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||| |||||||| | ||||||  ||||| |||||  |||||||| ||||||||| ||||||||| | | ||| ||||||||||||||||||||||    
T  24919766 ttatgtcttcgattcacctaaaacgggattagttatatctgggaaagataaactagctaaatatatgttctctgtgaccacattttttaaggtgcgtg 24919669  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 24921084 - 24921028
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  24921084 agttactaacattgttgaactatcctacagcttaatgagtcactctgcctgttatgt 24921028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 1082708 - 1082637
Alignment:
Q  81 gattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||| || || ||||| ||||||||||| |||||| || ||||||||||||||||||||| ||||||    
T  1082708 gattatttacacctgagaaagttaaactagccagatatatagtctgtgtaaccacattttttaagatgcgtg 1082637  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 1082918 - 1082847
Alignment:
Q  81 gattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||| || ||||| |||||||||| ||||||| ||  |||||||||||||||||||| ||||||    
T  1082918 gattatttatacctgagaaagttaaactagcccaatatatagtccgtgtaaccacattttttaagatgcgtg 1082847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 31391151 - 31391218
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  31391151 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 31391218  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 31391575 - 31391642
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  31391575 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 31391642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 31391363 - 31391429
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 121  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | |||||||||||||||||||    
T  31391363 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatg 31391429  T

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Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 31392000 - 31392067
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | |||||||||||| |||||||    
T  31392000 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaattatatgg 31392067  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 31390955 - 31390999
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactc 48  Q
    ||||||||||||||||||||| |||| || |||||||||||||||    
T  31390955 agttattaacattgttgaactttcctacattttaatgagtcactc 31390999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 31391787 - 31391855
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatac-ttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || | ||||| | ||||||||||||||||||||    
T  31391787 ttatgtgttcgattctcataaaacaggattagttacacatggggaatgataaactagccaaatatatgg 31391855  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 24920824 - 24920757
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||| | ||||||||||||| ||| || || ||| | ||||||| ||||||||||||    
T  24920824 ttatgtgttcgattcgcgtaaaacaagattagttacacctgagaatgataaactaaccaaatatatgg 24920757  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 24920401 - 24920336
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatat 120  Q
    ||||||||||||||  | ||||||||||||  ||| || |||||| | ||||||||||||||||||    
T  24920401 ttatgtgttcgatttgcgtaaaacaagatttgttacacgtgggaatgataaactagccaaatatat 24920336  T

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Target: chr6 (Bit Score: 86; Significance: 2e-41; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 15342177 - 15342080
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15342177 ttatgtgttcgattcgcttaaaacaagattatttatacttgggaaagataaactagccaaatgtatggtttgtgtaaccacattttttaaggtgcgtg 15342080  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 15341965 - 15341872
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtg 148  Q
    ||||||||||||||| | |||||||||||||||||||||   ||||  ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  15341965 ttatgtgttcgattcgcctaaaacaagattatttatactccagaaatataaactagccaaatatatggtctgtgtgaccacattttttaaggtg 15341872  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 15341753 - 15341656
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| | |||||| |||||||||| || |||||||| ||||||| ||||||||||||| ||||| | |||||||||||||| |||||    
T  15341753 ttatgtgttcgattcgcctaaaacgagattatttacacctgggaaagataaactacccaaatatatggtctgtgtgatcacattttttaaggcgcgtg 15341656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 19846247 - 19846344
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| | ||||||  |||||||||||| || ||||| ||||||||||||||||||| | ||| | ||||||||||||||||||||||    
T  19846247 ttatgtgttcgattcgcctaaaacgggattatttatacctgagaaagataaactagccaaatatatgatctgtctgaccacattttttaaggtgcgtg 19846344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 19846035 - 19846129
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgc 149  Q
    ||||||||| ||||| | ||||||  |||||||||||| |||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||||    
T  19846035 ttatgtgtttgattcccctaaaacgggattatttatacctgggaaagataaactagccaaatatatggtctgtgtgatcacatattttaaggtgc 19846129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 15342401 - 15342345
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15342401 agttactaacattgttgaactatcctgcagtttaatgagtcactctacatgttatgt 15342345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 19845831 - 19845925
Alignment:
Q  58 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||| | |||||   |||||||||||| ||| |||| |||||||| |||||||||||||||||| || ||||| |||||||||||||    
T  19845831 tgtgttcgattcgcctaaaatgggattatttatacctggaaaagttaaactagtcaaatatatggtttgtgtgacgacattctttaaggtgcgtg 19845925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 14524065 - 14524132
Alignment:
Q  85 atttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||||| |||| |||| ||||||||||| ||||| |||||||| |||||||||||||    
T  14524065 atttatacttgggaaagataaattagctaaatatatggtctgtgtgaccacattgtttaaggtgcgtg 14524132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 19845570 - 19845626
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||| | ||||||||    
T  19845570 agttactaacattgttcaactatcctacagtttaatgagtcactctacctgttatgt 19845626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 15341503 - 15341445
Alignment:
Q  94 tgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||| |||||||| |||||||||||| ||||| | ||||||||||||| ||||||    
T  15341503 tgggaaagataaactagtcaaatatatggtctgtgtgaacacattttttaagatgcgtg 15341445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 2430701 - 2430660
Alignment:
Q  111 ccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||||||| |||||||||||| || ||||||    
T  2430701 ccaaatatatggtttgtgtgaccacattttttcagttgcgtg 2430660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 2e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 11355468 - 11355565
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11355468 ttatgtgttcgattcacttaaaacaagattatttatacttgggaaagataaactagccaaatatatggtttgtgtaaccacattttgtaaggtgcgtg 11355565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 11355273 - 11355353
Alignment:
Q  72 ttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11355273 ttaaaacaagattatttatacttgggaaagataaactagacaaatatatggtttgtgtaaccacattttttaaggtgcgtg 11355353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 1400734 - 1400775
Alignment:
Q  111 ccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||    
T  1400734 ccaaatatatggtatgtgtgaccacattttttaagttgcgtg 1400775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 5e-39; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 25010492 - 25010589
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  25010492 ttatgtgttcgattcgcttaaaacaagattatttatacttgggaaagataaaatagtcaaatatatggtttgtgtaaccacattttttaaggtgcgtg 25010589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 25010298 - 25010375
Alignment:
Q  72 ttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgc 149  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||    
T  25010298 ttaaaacaagattatttatacttgggaaagataaactagccaaatttatggtttgtgtaaccacatttgttaaggtgc 25010375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 34164268 - 34164365
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||  |||||| | |||||||  ||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  34164268 ttatgtgcccgattcgcctaaaacagaattatttatacatgggaaagataaactagccaaatatatggtctgtgtgaccacattttataaggtgcgtg 34164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 34164480 - 34164577
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| | |||||| ||||||||||||| ||| |||| |||||||| |||||||||||||||||| |||| ||||||  |||||||||    
T  34164480 ttatgtgttcgattcgcctaaaacgagattatttatacctggaaaagataaactagtcaaatatatggtttgtgtgaccatatttttacaggtgcgtg 34164577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 4267663 - 4267719
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  4267663 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 4267719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 13819056 - 13819000
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||  ||||||||    
T  13819056 agttactaacattgttgaactatcctacagtttaatgagtcactgtgtctgttatgt 13819000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 4268345 - 4268412
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
T  4268345 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 4268412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 4268769 - 4268835
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 121  Q
    ||||||||||||||| | ||||||| ||||| ||| || |||||| | |||||||||||||||||||    
T  4268769 ttatgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatg 4268835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 12212147 - 12212212
Alignment:
Q  57 atgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||| | ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  12212147 atgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatgg 12212212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 13818798 - 13818731
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||| | ||||||| ||| | ||| || |||||| | ||||||||||||||||||||    
T  13818798 ttatgtgttcgattcgcgtaaaacaggataagttacacctgggaatgataaactagccaaatatatgg 13818731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 12211509 - 12211595
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttt 141  Q
    ||||||||| ||||| | |||||| |||||| ||| || | |||||| || ||||||||||||||||| |||| | |||||| ||||    
T  12211509 ttatgtgtttgattcacataaaacgagattagttacacctcggaaagatacactagccaaatatatgggttgtatgaccacaatttt 12211595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 12211723 - 12211788
Alignment:
Q  57 atgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||| | ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
T  12211723 atgtgttcgattcgcgtaaaacaggattagttacatctgggaatgataaactagccaaatatatgg 12211788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 13815447 - 13815382
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatat 120  Q
    ||||||||||||||| | ||||||| ||||  ||| || |||||| | ||||||||||||||||||    
T  13815447 ttatgtgttcgattcgcgtaaaacaggatttgttacacctgggaatgataaactagccaaatatat 13815382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 4268558 - 4268625
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
T  4268558 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 4268625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 27335563 - 27335532
Alignment:
Q  111 ccaaatatatggtttgtgtaaccacatttttt 142  Q
    ||||||||||||||||||| ||||||||||||    
T  27335563 ccaaatatatggtttgtgtgaccacatttttt 27335532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 24708016 - 24708113
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||| | | |||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  24708016 ttatgtgttcgattcgcctgaaacaatattatttatacttgggaaagataaactagcaaaatatatggtctgtgtgaccacattttttaaggtgcgtg 24708113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 17227654 - 17227740
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttt 141  Q
    ||||||||||||||| | ||||||  |||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||||||    
T  17227654 ttatgtgttcgattcgcctaaaacgggattatttatatctgggaaagataaactagccaaatatatggtttgtgtgaccatattttt 17227740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 29497069 - 29497163
Alignment:
Q  58 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||| | |||||  ||||||||||||| |||||||| ||||||||||| |||||| || ||||||| ||||||||||||| ||||||    
T  29497069 tgtgttcgattcgcctaaaatgagattatttatacctgggaaagttaaactagccagatatatagtatgtgtaagcacattttttaagatgcgtg 29497163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 29496808 - 29496864
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29496808 agttactaacattgttgaactatcctacagtttaatgagtcactctgcatgttatgt 29496864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 17227442 - 17227539
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||| ||||| | |||||||  ||||||||||| |  ||||| |  |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  17227442 ttatgtgtttgattcgcctaaaacagaattatttatacctaagaaagatttactagccaaatatatggtctgtgtgaccacattttttaaggtgcgtg 17227539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 23675909 - 23675853
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  23675909 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 23675853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 19148855 - 19148799
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||    
T  19148855 agttattaacattgttgaactatcctacagtttaatgagtcattgtgcctgttatgt 19148799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 29497302 - 29497373
Alignment:
Q  81 gattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||| || ||||| ||||||||||| |||||| || ||||||| ||||||||||||| ||||||    
T  29497302 gattatttatacctgagaaagttaaactagccagatatatagtctgtgtaagcacattttttaagatgcgtg 29497373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 17225148 - 17225215
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||| | ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  17225148 ttatgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatgg 17225215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 19148173 - 19148106
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
T  19148173 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 19148106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 23675227 - 23675160
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
T  23675227 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 23675160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 19147749 - 19147683
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 121  Q
    ||||||||||||||| | ||||||| ||||| ||| || |||||| | |||||||||||||||||||    
T  19147749 ttatgtgttcgattcgcgtaaaacaggattagttacacctgggaatgataaactagccaaatatatg 19147683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 17227280 - 17227328
Alignment:
Q  103 taaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  17227280 taaactagccaaatatatggtatgtgtgaccaca-tttttaaggtgcgtg 17227328  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 24707787 - 24707847
Alignment:
Q  4 agttattaacattgttgaactat----cctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||    | ||||||||| ||||||||||||||||||||||    
T  24707787 agttactaacattgttgaactatatatcttgcagtttattgagtcactctgcatgttatgt 24707847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 38244853 - 38244809
Alignment:
Q  108 tagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||||||| ||||| |||||||||||| || ||||||    
T  38244853 tagccaaatatatggtctgtgtgaccacattttttcagttgcgtg 38244809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 19147960 - 19147893
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
T  19147960 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 19147893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 23675014 - 23674947
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
T  23675014 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 23674947  T

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Target: scaffold0012 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 142389 - 142299
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaag 145  Q
    ||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||| |||||    
T  142389 ttatgtgttcgattcgcctaaaacaagattatttatacctgggaaagataaactagccaaatatatggtctgtgtgaccacatttattaag 142299  T

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Target: scaffold0012; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 142172 - 142078
Alignment:
Q  58 tgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatggtttgtgtaaccacattttttaaggtgcgtg 152  Q
    |||||||||||| | ||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  142172 tgtgttcgattcgcctaaaagaagattatttatacatgggaaagataaactagccaaatatacggtctgtgtgaccacatttgttaaggtgcgtg 142078  T

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Target: chr7 (Bit Score: 45; Significance: 5e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 41549199 - 41549255
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  41549199 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 41549255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22143610 - 22143677
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22143610 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22143677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22143822 - 22143889
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22143822 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22143889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22144034 - 22144101
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22144034 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22144101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22144246 - 22144313
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22144246 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22144313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22144457 - 22144524
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22144457 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22144524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22146415 - 22146482
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22146415 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22146482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22146627 - 22146694
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22146627 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22146694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22146839 - 22146906
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22146839 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22146906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22147051 - 22147118
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22147051 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22147263 - 22147330
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22147263 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22147475 - 22147542
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22147475 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22147899 - 22147966
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22147899 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22213219 - 22213286
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22213219 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22213431 - 22213498
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22213431 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22213852 - 22213919
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22213852 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22214064 - 22214131
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22214064 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22214276 - 22214343
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22214276 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22214488 - 22214555
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22214488 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22214912 - 22214979
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22214912 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22215124 - 22215191
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22215124 ttatgtgttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22215191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22147687 - 22147754
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22147687 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22147754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22148111 - 22148178
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22148111 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22148178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22213007 - 22213074
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22213007 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22214700 - 22214767
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||| ||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22214700 ttatgtgtttgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22214767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 41549881 - 41549948
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
T  41549881 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 41549948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 12490980 - 12490914
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatg 121  Q
    ||||||||| ||||| | ||||||  |||||||||||| || ||||| |||||||||||||||||||    
T  12490980 ttatgtgtttgattcgcctaaaacgggattatttatacctgagaaagataaactagccaaatatatg 12490914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 22212802 - 22212862
Alignment:
Q  62 ttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||| ||||||| ||||| ||| || |||||| | ||||||||||||||||||||    
T  22212802 ttcgattctcataaaacaggattagttacacatgggaatgataaactagccaaatatatgg 22212862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 22213643 - 22213709
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| |||||  || || |||||| | ||||||||||||||||||||    
T  22213643 ttatgtgttcgattctcataaaacaggatta-gtacacatgggaatgataaactagccaaatatatgg 22213709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 41550094 - 41550161
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
T  41550094 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 41550161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 55042499 - 55042555
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  55042499 agttattaacattgttgaactatcctacagtttaatgagtcactgtgcctgttatgt 55042555  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 55043181 - 55043248
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||||| ||||||| ||||| ||| |  |||||| | ||||||||||||||||||||    
T  55043181 ttatgtgttcgattctcgtaaaacatgattagttacagctgggaatgataaactagccaaatatatgg 55043248  T

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Target: chr4; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 55043394 - 55043461
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||||||| || ||||||| ||||| ||| |  || ||| | ||||||||||||||||||||    
T  55043394 ttatgtgttcgattatcgtaaaacaggattagttacaactgagaatgataaactagccaaatatatgg 55043461  T

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Target: scaffold0186 (Bit Score: 37; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 27693 - 27749
Alignment:
Q  4 agttattaacattgttgaactatcctgcagtttaatgagtcactctgcatgttatgt 60  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| | | ||||||||    
T  27693 agttactaacattgttgaactatcctacagtttaatgagtcactgtacctgttatgt 27749  T

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Target: scaffold0186; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 27952 - 28018
Alignment:
Q  56 tatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    |||||||||||||| | ||||||||||||| ||| || || ||| | ||||||||||||||||||||    
T  27952 tatgtgttcgattcgcgtaaaacaagattagttacacctgagaatgataaactagccaaatatatgg 28018  T

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Target: scaffold0186; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 28587 - 28654
Alignment:
Q  55 ttatgtgttcgattctcttaaaacaagattatttatacttgggaaaggtaaactagccaaatatatgg 122  Q
    ||||||||||||||| | ||||||| ||||| ||| || || ||| | |||||||||||||| |||||    
T  28587 ttatgtgttcgattcgcgtaaaacaggattagttacacctgtgaatgataaactagccaaatctatgg 28654  T

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