View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4342-Insertion-3 (Length: 125)

Name: NF4342-Insertion-3
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4342-Insertion-3
NF4342-Insertion-3
[»] chr4 (1 HSPs)
chr4 (4-117)||(42309080-42309193)
[»] chr5 (1 HSPs)
chr5 (5-42)||(2078582-2078619)
[»] chr8 (2 HSPs)
chr8 (5-43)||(30453893-30453931)
chr8 (5-42)||(29520507-29520544)
[»] chr3 (3 HSPs)
chr3 (5-42)||(31566303-31566340)
chr3 (5-42)||(51450808-51450845)
chr3 (5-42)||(52136331-52136368)
[»] chr2 (3 HSPs)
chr2 (5-42)||(1648024-1648061)
chr2 (5-42)||(16290759-16290796)
chr2 (5-42)||(37520607-37520644)
[»] chr1 (3 HSPs)
chr1 (5-42)||(6985655-6985692)
chr1 (5-42)||(52920995-52921032)
chr1 (7-42)||(4001864-4001899)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 7e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 42309193 - 42309080
Alignment:
Q  4 agtcccaagcccggataaaaggatagggttgtgttaggcatcaaacgtaaacttattcgaatccctaacatgaatctaatatccaatagctgtaactagt 103  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42309193 agtcccaagcccggataaaaggatagggttgtgttaggcctcaaacgtaaacttattcgaatccctaacatgaatctaatatccaatagctgtaactagt 42309094  T
Q  104 gatgttgtatggaa 117  Q
    ||||||||||||||    
T  42309093 gatgttgtatggaa 42309080  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 2078619 - 2078582
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2078619 gtcccaagcccggataaaaggagagggttgtgttaggc 2078582  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 30453931 - 30453893
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggca 43  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  30453931 gtcccaagcccggataaaaagagagggttgtgttaggca 30453893  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 29520507 - 29520544
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  29520507 gtcccaagcccgggtaaaaggagagggttgtgttaggc 29520544  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 31566340 - 31566303
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  31566340 gtcccaagcccgggtaaaaggagagggttgtgttaggc 31566303  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 51450845 - 51450808
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  51450845 gtcccaagcccgggtaaaaggagagggttgtgttaggc 51450808  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 52136331 - 52136368
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  52136331 gtcccaagcccgggtaaaaggagagggttgtgttaggc 52136368  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 1648024 - 1648061
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  1648024 gtcccaagcccgggtaaaaggagagggttgtgttaggc 1648061  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 16290759 - 16290796
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  16290759 gtcccaagcccgggtaaaaggaaagggttgtgttaggc 16290796  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 37520607 - 37520644
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  37520607 gtcccaagcccgggtaaaaggagagggttgtgttaggc 37520644  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6985692 - 6985655
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  6985692 gtcccaagcccggatgaaaggagagggttgtgttaggc 6985655  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 52920995 - 52921032
Alignment:
Q  5 gtcccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  52920995 gtcccaagcccgggtaaaaggagagggttgtgttaggc 52921032  T

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Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 4001864 - 4001899
Alignment:
Q  7 cccaagcccggataaaaggatagggttgtgttaggc 42  Q
    ||||||||||| |||||||| |||||||||||||||    
T  4001864 cccaagcccgggtaaaaggagagggttgtgttaggc 4001899  T

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