View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4342-Insertion-5 (Length: 246)
Name: NF4342-Insertion-5
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4342-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 12186073 - 12186242
Alignment:
| Q |
4 |
atgtctgaagagtgaatttagcatggattg-aaaaaataaatagagaaatatggtaagaagaata--aggtgcgtgttgatattaatcttagcct----- |
95 |
Q |
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| T |
12186073 |
atgtctgaagagtgaatttagcatggattgaaaaaaataaatagagaaatatggtaagaagaataagaggtgtgtgttgatattaatcttagccttagtc |
12186172 |
T |
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| Q |
96 |
-ttgtgtcaggtgtttagtgtttagtttcgaaaatgaaactggaaatgaaatctctctatcgaatctttg |
164 |
Q |
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| T |
12186173 |
attgtgtcaggtgtttagtgtttagtttcgaaaatgaaactggaaatgaaatctctctatcgaatctttg |
12186242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 12186313 - 12186401
Alignment:
| Q |
159 |
tctttgctttgagttttcctctaataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatg-aagttaatgtaa |
246 |
Q |
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| T |
12186313 |
tctttgctttgagttttcctctaataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatgaaagttaatgtaa |
12186401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 12187348 - 12187404
Alignment:
| Q |
180 |
taataaagtattgttgcttattcttaatgtgttttatgctatattcaggtgaatgaa |
236 |
Q |
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| T |
12187348 |
taataaaatattgttacttattcttaacgtgttttctgctatattcaggtgaatgaa |
12187404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 5446195 - 5446132
Alignment:
| Q |
159 |
tctttgctttgagttttcctctaataaagtattgttgcttatt-cttaatgtgttttatgctatat |
223 |
Q |
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| T |
5446195 |
tcttttctttgaattttcctctca--aagtattgttgcttattacttaatgtgttttctgctatat |
5446132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 5455239 - 5455176
Alignment:
| Q |
159 |
tctttgctttgagttttcctctaataaagtattgttgcttatt-cttaatgtgttttatgctatat |
223 |
Q |
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| T |
5455239 |
tcttttctttgaattttcctctca--aagtattgttgcttattacttaatgtgttttctgctatat |
5455176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 8979842 - 8979886
Alignment:
| Q |
160 |
ctttgctttgagttttcctctaataaagtattgttgcttattctt |
204 |
Q |
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| T |
8979842 |
ctttgctttgaatcttcctctaaaaaagtattgttgctttttctt |
8979886 |
T |
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