View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4342-Insertion-8 (Length: 211)

Name: NF4342-Insertion-8
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4342-Insertion-8
NF4342-Insertion-8
[»] scaffold0648 (1 HSPs)
scaffold0648 (1-211)||(519-729)
[»] scaffold0271 (1 HSPs)
scaffold0271 (1-211)||(14899-15109)
[»] chr1 (1 HSPs)
chr1 (5-211)||(41415062-41415271)


Alignment Details
Target: scaffold0648 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 729 - 519
Alignment:
Q  1 acagcagcatgtgaagtgtcgaatgcaccgaagaagaagaaaatctgctgcgcttgtcctgacacaaagaggctgcgggatgagtgcatagtggagcacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  729 acagcagcatgtgaagtgtcgaatgcaccgaagaagaagaaaatctgctgcgcttgtcctgacacaaagaggctgcgggatgagtgcatagtggaacacg 630  T
Q  101 gggaggatgcttgtgccaagtggattgaagctcatcgaatttgtcttcgtgctgagggattcaatgtttgagaatcggtaattctttgagataataataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  629 gggaggatgcttgtgccaagtggattgaagctcatcgaatttgtcttcgtgctgagggattcaatgtttgagaattggtaattctttaagataataataa 530  T
Q  201 gaattgttata 211  Q
    |||||||||||    
T  529 gaattgttata 519  T

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Target: scaffold0271 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 15109 - 14899
Alignment:
Q  1 acagcagcatgtgaagtgtcgaatgcaccgaagaagaagaaaatctgctgcgcttgtcctgacacaaagaggctgcgggatgagtgcatagtggagcacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15109 acagcagcatgtgaagtgtcgaatgcaccgaagaagaagaaaatctgctgcgcttgtcctgacacaaagaggctgcgggatgagtgcatagtggaacacg 15010  T
Q  101 gggaggatgcttgtgccaagtggattgaagctcatcgaatttgtcttcgtgctgagggattcaatgtttgagaatcggtaattctttgagataataataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  15009 gggaggatgcttgtgccaagtggattgaagctcatcgaatttgtcttcgtgctgagggattcaatgtttgagaattggtaattctttaagataataataa 14910  T
Q  201 gaattgttata 211  Q
    |||||||||||    
T  14909 gaattgttata 14899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 41415062 - 41415271
Alignment:
Q  5 cagcatgtgaagtgtcgaatgcaccgaagaagaagaaaatctgctgcgcttgtcctgacacaaagaggctgcgggatgagtgcatagtggagcacgggga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||    
T  41415062 cagcatgtgaagtgtcgaatgcaccgaagaagaagaaaatctgttgcgcttgtcctgacacgaagaggctgcgagatgagtgcatagttgaacacgggga 41415161  T
Q  105 ggatgcttgtgccaagtggattgaagctcatcgaatttgtcttcgtgctgagggattcaatgtttgag---aatcggtaattctttgagataataataag 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||| |||||||||||    
T  41415162 ggatgcttgtgccaagtggattgaagctcatcgaatttgtcttcgtgctgaaggattcaatgtttgagattaatcggtaattctttgaaataataataag 41415261  T
Q  202 aattgttata 211  Q
    ||||||||||    
T  41415262 aattgttata 41415271  T

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