View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4342_high_1 (Length: 427)
Name: NF4342_high_1
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4342_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 46665640 - 46665319
Alignment:
| Q |
18 |
ttctttaattatagataagaaaattcttcaaatagctcacaataagaacatacatgagatgacgagcttgttttgttgcatgcaagagaaacgatagatc |
117 |
Q |
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| T |
46665640 |
ttctttaattatagataagaaaattcttcaaatagctcacaataagaacatacatgagatgacgagcttgttttgttgcatgcaagagaaacgatcgatc |
46665541 |
T |
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| Q |
118 |
ttggaatataatgcactagctatttggaaacagaaaagtacgtaattataataatagtttggg-----aagtgttagcatttggcttaggacttttatag |
212 |
Q |
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| T |
46665540 |
ttggaatataatgcactagctatttggaaacagagaag-------------ttatagtttgggaagttaagtgttagca-ttggcttaggacttttatag |
46665455 |
T |
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| Q |
213 |
tttgggaagttagttacttagttcggtgtacatatagtttctgttattgcttataactgcttataactgaatgtaactgaattagttacgcattaggaaa |
312 |
Q |
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| T |
46665454 |
tttgggaagttagttacttagtttggtgtac--atagtttctgttat----------tgcttataactgaatgtaactgaattagttacgcattaggaaa |
46665367 |
T |
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| Q |
313 |
gtcaataaagcttatataaaattggtttaatccttattgctataatga |
360 |
Q |
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| T |
46665366 |
gtcaataaagcttatataaaattggtataatccttattgctataatga |
46665319 |
T |
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