View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4342_high_1_N (Length: 560)

Name: NF4342_high_1_N
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4342_high_1_N
NF4342_high_1_N
[»] chr5 (7 HSPs)
chr5 (282-549)||(3651528-3651783)
chr5 (1-213)||(3651252-3651459)
chr5 (381-536)||(17464158-17464310)
chr5 (379-495)||(30899980-30900092)
chr5 (379-445)||(33030858-33030924)
chr5 (5-94)||(3512433-3512527)
chr5 (379-452)||(6741965-6742038)
[»] chr4 (5 HSPs)
chr4 (379-495)||(34670536-34670649)
chr4 (379-450)||(18912276-18912347)
chr4 (395-445)||(39593856-39593906)
chr4 (338-425)||(42234307-42234395)
chr4 (165-213)||(3677700-3677748)
[»] chr3 (4 HSPs)
chr3 (395-531)||(37387547-37387678)
chr3 (383-495)||(41163107-41163215)
chr3 (379-452)||(21353675-21353748)
chr3 (379-427)||(5797252-5797300)
[»] chr8 (5 HSPs)
chr8 (380-452)||(9054748-9054820)
chr8 (397-522)||(6366636-6366758)
chr8 (404-521)||(24261917-24262030)
chr8 (395-495)||(33503712-33503809)
chr8 (379-453)||(34477132-34477203)
[»] chr7 (6 HSPs)
chr7 (381-531)||(45685580-45685727)
chr7 (379-452)||(5817181-5817254)
chr7 (384-430)||(22887076-22887122)
chr7 (379-420)||(761287-761328)
chr7 (379-452)||(4162680-4162753)
chr7 (384-428)||(22835587-22835631)
[»] chr1 (9 HSPs)
chr1 (338-469)||(37918730-37918860)
chr1 (379-453)||(918389-918464)
chr1 (404-495)||(15864702-15864789)
chr1 (379-474)||(3019843-3019938)
chr1 (380-467)||(17345415-17345502)
chr1 (377-420)||(32736939-32736982)
chr1 (483-536)||(47860021-47860074)
chr1 (474-535)||(48382321-48382382)
chr1 (381-421)||(10997071-10997111)
[»] chr6 (1 HSPs)
chr6 (383-453)||(33690735-33690805)
[»] chr2 (6 HSPs)
chr2 (379-495)||(28770645-28770758)
chr2 (380-471)||(41586443-41586532)
chr2 (408-521)||(44732093-44732202)
chr2 (379-421)||(15903832-15903874)
chr2 (379-469)||(27139915-27140005)
chr2 (474-511)||(37527033-37527070)
[»] scaffold0016 (1 HSPs)
scaffold0016 (379-421)||(102436-102478)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 282 - 549
Target Start/End: Original strand, 3651528 - 3651783
Alignment:
Q  282 atttctacctatttttcaagtcactcaaactctagttcagaccaatacgtcgtttgaaataagtgataaaa-aggtgtaacaagaaattagattttgttc 380  Q
    ||||||| |||||||||||||||||||||||||||||||   |||          ||||| |||||||||| |||||||||||||||||||||| |||||    
T  3651528 atttctatctatttttcaagtcactcaaactctagttca---caa----------gaaattagtgataaaaaaggtgtaacaagaaattagattatgttc 3651614  T
Q  381 acaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcc 480  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651615 acaaagaacaaaccctaatttctacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcc 3651714  T
Q  481 tctaatgagatctcattgtctaaggtgtttgtgaagtgtttctcaacccaaaaaccacccttaatctct 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  3651715 tctaatgagatctcattgtctaaggtgtttgtgaagtgtttctcaacccaaaaaccaccatcaatctct 3651783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3651252 - 3651459
Alignment:
Q  1 aattatataaagtattagctacaacattattgcataaatacttgaatagtaaataatctttctagtgattattttgaatcatatttttaattactgaatt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  3651252 aattatataaagtattagcttcaacattattgcataaatacttgaatagtaaataatctttctaatgactattttgaatcatatttttcattactgaatt 3651351  T
Q  101 cgtaacttaaaatcacacaaattaactttgatatgtagagcaaaataaaatgaaatagtaatcaaatcaaaggagcttcaagcaagaagaacaacatacc 200  Q
    |||||||||||||| ||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651352 cgtaacttaaaatcgcacaaattaactttgatatgtagagc-----aaaatgaaatagtaatcaaatcaaaggagcttcaagcaagaagaacaacatacc 3651446  T
Q  201 tatatctaagtgt 213  Q
    || ||||||||||    
T  3651447 taaatctaagtgt 3651459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 536
Target Start/End: Original strand, 17464158 - 17464310
Alignment:
Q  381 acaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcc 480  Q
    |||||||| |||| |||| ||||| | ||||||||||||||||||||| |||||||||  ||||| ||||||| | ||||| ||||||||   || |||     
T  17464158 acaaagaataaaccctaacttcaatctatttttcaagtcactcaaacccataatgaattttaagacaaaacaataaagaaagctttttga---tctttca 17464254  T
Q  481 tctaatgagatctcattgtctaaggtgtttgtgaagtgtttctcaacccaaaaacc 536  Q
    ||||||||||||| | |  | || |||||||||||||||||| || ||||| ||||    
T  17464255 tctaatgagatcttactaccgaatgtgtttgtgaagtgtttcccagcccaagaacc 17464310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 30899980 - 30900092
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattcctt 478  Q
    ||||||||||||||||||| |||| ||  |||||||||| |||||||||| | || ||||||| ||| ||||||  | ||||| |||||| |   |||||    
T  30899980 tcacaaagaacaaactctattttctactgatttttcaagccactcaaacccacaaagaatcct-agagaaaacactaaagaaagctttttta---tcctt 30900075  T
Q  479 cctctaatgagatctca 495  Q
    |||||||||| ||||||    
T  30900076 cctctaatgaaatctca 30900092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 33030924 - 33030858
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaaga 445  Q
    ||||||||||||||   ||||||| ||||||||||||||||||||| ||    ||||||||||||||    
T  33030924 tcacaaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaaga 33030858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 3512527 - 3512433
Alignment:
Q  5 atataaagtattagctacaacattattgcataa----atacttgaatag-taaataatctttctagtgattattttgaatcatatttttaattac 94  Q
    ||||||||||||||||||||| | |||||||||    ||||||||||||  ||||  ||||||| |||| || ||| ||||||||| ||||||||    
T  3512527 atataaagtattagctacaacctcattgcataaatgtatacttgaatagcaaaatcgtctttctggtgactaattttaatcatattcttaattac 3512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 6741965 - 6742038
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaaca 452  Q
    ||||||||||||||  |||||||| || ||||||||||||||| || ||    |||||||||||||| ||||||    
T  6741965 tcacaaagaacaaaacctaatttctactcatttttcaagtcacccacactctcaatgaatcctaagaaaaaaca 6742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 495
Target Start/End: Complemental strand, 34670649 - 34670536
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattcctt 478  Q
    ||||||||||||||   ||||||| | ||||||||||||||||||| ||  | |||||||||||||| ||||||  | ||||||||||| ||   |||||    
T  34670649 tcacaaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaacactaaagaaaacttttaga---tcctt 34670553  T
Q  479 cctctaatgagatctca 495  Q
    |||||||||||||||||    
T  34670552 cctctaatgagatctca 34670536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 18912347 - 18912276
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaa 450  Q
    ||||||||||||||| |||| ||  | ||||||||||||||||||||||| | |||||||||||||| ||||    
T  18912347 tcacaaagaacaaaccctaaattatatccatttttcaagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 39593856 - 39593906
Alignment:
Q  395 ctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaaga 445  Q
    |||||||| |||| ||| |||||||||||||||| | ||||||||||||||    
T  39593856 ctaatttctacccctttgtcaagtcactcaaacccacaatgaatcctaaga 39593906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 42234395 - 42234307
Alignment:
Q  338 aaataagtgataaaaaggtgtaacaagaaattagattt--tgttcacaaagaacaaactctaatttcaacccatttttcaagtcactcaa 425  Q
    |||||||||||| ||||  || |||||||||||||| |   ||||||||||||| |||||||||||| || ||||||| |||| ||||||    
T  42234395 aaataagtgatataaagaggttacaagaaattagatctcaagttcacaaagaac-aactctaatttctactcattttttaagttactcaa 42234307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 3677748 - 3677700
Alignment:
Q  165 aatcaaaggagcttcaagcaagaagaacaacatacctatatctaagtgt 213  Q
    |||||||| |||||||||||| || ||||| | ||||||||||||||||    
T  3677748 aatcaaagtagcttcaagcaacaacaacaatagacctatatctaagtgt 3677700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 531
Target Start/End: Original strand, 37387547 - 37387678
Alignment:
Q  395 ctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatctc 494  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||||||| |  || ||||||| |||  ||||||||||  ||     ||||||||||||    
T  37387547 ctaatttctacccatttttcaagtcacttaaaccgacaatgaatcctaaaaataaccaagagaaaaagttttttgatatatct-----taatgagatctc 37387641  T
Q  495 attgtctaaggtgtttgtgaagtgtttctcaacccaa 531  Q
    |   || ||||||||||||||||||||| ||||||||    
T  37387642 accatcgaaggtgtttgtgaagtgtttcccaacccaa 37387678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 495
Target Start/End: Complemental strand, 41163215 - 41163107
Alignment:
Q  383 aaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatga-atcctaagataaaacaagagagaaaactttttgatattccttcct 481  Q
    ||||||||||| |||||||| ||||| || |||||||||||||||| | |  || ||||| ||| ||||||||||||||| |||     |  ||||||||    
T  41163215 aaagaacaaaccctaatttcgacccagttatcaagtcactcaaacccacatagagatcctgagagaaaacaagagagaaagctt-----tggtccttcct 41163121  T
Q  482 ctaatgagatctca 495  Q
    ||||||||||||||    
T  41163120 ctaatgagatctca 41163107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 21353675 - 21353748
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaaca 452  Q
    |||||||||||| |  |||||||| |||||||||||| | |||||| || || |||||||| ||||| ||||||    
T  21353675 tcacaaagaacacaacctaatttctacccatttttcatgccactcacacttacaatgaatcttaagagaaaaca 21353748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 5797252 - 5797300
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaac 427  Q
    ||||||| ||||||||||||||||   ||||||||||||||||| ||||    
T  5797252 tcacaaataacaaactctaatttctttccatttttcaagtcacttaaac 5797300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 452
Target Start/End: Complemental strand, 9054820 - 9054748
Alignment:
Q  380 cacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaaca 452  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| ||    |||||||||||||| ||||||    
T  9054820 cacaaagaacaaaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 522
Target Start/End: Original strand, 6366636 - 6366758
Alignment:
Q  397 aatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatctcat 496  Q
    |||||| | ||| ||||||| ||||||||||  | |||||||||||||| ||||||| | | ||||| ||||||   |||||  |||||||||||||||     
T  6366636 aatttctatccacttttcaattcactcaaactaacaatgaatcctaagagaaaacaataaaaaaaacgttttga---tcctttttctaatgagatctcac 6366732  T
Q  497 tgtctaaggtgtttgtgaagtgtttc 522  Q
    |||  ||||||||||| |||||||||    
T  6366733 tgttaaaggtgtttgtaaagtgtttc 6366758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 521
Target Start/End: Original strand, 24261917 - 24262030
Alignment:
Q  404 acccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatctcattgtctaa 503  Q
    |||||||||| |||||||||||| | | |||||||| ||||| ||||||| | |||||  |||| ||   ||||| |||||||||||||||| | |||||    
T  24261917 acccattttttaagtcactcaaatccaaaatgaatcataagagaaaacaataaagaaagtttttgga---tccttactctaatgagatctcactatctaa 24262013  T
Q  504 ggtgtttgtgaagtgttt 521  Q
    || |||||||||||||||    
T  24262014 gg-gtttgtgaagtgttt 24262030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 33503809 - 33503712
Alignment:
Q  395 ctaatttcaacccatttttcaagtcactcaaacctataatga-atcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatct 493  Q
    |||||||| ||||||||||||||||||||||||| | |  || |||||||||  || ||||||||||||||||||  |||| ||||||||||||||||||    
T  33503809 ctaatttctacccatttttcaagtcactcaaacccacatagagatcctaaga-gaatcaagagagaaaacttttt--tatt-cttcctctaatgagatct 33503714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 34477203 - 34477132
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaa 453  Q
    |||||||||||||   |||||||| ||||||||||||||||||||||| | | ||||||||| |||| |||||||    
T  34477203 tcacaaagaacaa---ctaatttcgacccatttttcaagtcactcaaatccacaatgaatccaaagagaaaacaa 34477132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 531
Target Start/End: Complemental strand, 45685727 - 45685580
Alignment:
Q  381 acaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcc 480  Q
    |||||||||||||  ||||||| | |||||||| ||||||||||||     |||||||||||||| ||||||||| |||||  ||||| |   ||||| |    
T  45685727 acaaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaatcctaagagaaaacaagaaagaaagttttttta---tcctttc 45685631  T
Q  481 tctaatgagatctcattgtctaaggtgtttgtgaagtgtttctcaacccaa 531  Q
    | | ||||||||| | | || |||||||||||||| |||||| ||||||||    
T  45685630 tttgatgagatctgactatcaaaggtgtttgtgaattgtttcacaacccaa 45685580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 5817254 - 5817181
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaaca 452  Q
    ||||||||||||||  |||||||| | ||||||||||||||||||| ||    |||||||||||||| ||||||    
T  5817254 tcacaaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaaca 5817181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 22887122 - 22887076
Alignment:
Q  384 aagaacaaactctaatttcaacccatttttcaagtcactcaaaccta 430  Q
    |||||||| |||||||||| | ||||||||||||||||| |||||||    
T  22887122 aagaacaatctctaatttctatccatttttcaagtcactaaaaccta 22887076  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 761287 - 761328
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtca 420  Q
    |||||||||| |||| |||||||| |||||||||||||||||    
T  761287 tcacaaagaaaaaacactaatttctacccatttttcaagtca 761328  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 4162753 - 4162680
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaaca 452  Q
    ||||||||||||||   ||||||| ||  ||||||||||||| ||||||| |||||||||| ||| | ||||||    
T  4162753 tcacaaagaacaaatcataatttctacttatttttcaagtcattcaaacccataatgaatcataacagaaaaca 4162680  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 22835631 - 22835587
Alignment:
Q  384 aagaacaaactctaatttcaacccatttttcaagtcactcaaacc 428  Q
    |||||||| |||||||||| | ||||||||||| |||||||||||    
T  22835631 aagaacaatctctaatttctatccatttttcaattcactcaaacc 22835587  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 469
Target Start/End: Original strand, 37918730 - 37918860
Alignment:
Q  338 aaataagtgataaaaaggtgtaacaagaaattagatttt--gttcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatg 435  Q
    |||||||||||| |||| ||| ||||||||||||||||   | ||| |||||||   | |||| ||| ||| |||||||||||| ||  || | | ||||    
T  37918730 aaataagtgatacaaagatgttacaagaaattagatttcaagctcataaagaac---ccctaaattctacctatttttcaagtcgcttcaatccacaatg 37918826  T
Q  436 aatcctaagataaaacaagagagaaaactttttg 469  Q
    |||||||||| |||||||||||||||||||||||    
T  37918827 aatcctaagagaaaacaagagagaaaactttttg 37918860  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 918464 - 918389
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagt-cactcaaacctataatgaatcctaagataaaacaa 453  Q
    |||||||||||||||  ||||||| ||||||||||||| | |||||||||| | |||||||||||||| |||||||    
T  918464 tcacaaagaacaaaccataatttctacccatttttcaattccactcaaacccacaatgaatcctaagagaaaacaa 918389  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 495
Target Start/End: Original strand, 15864702 - 15864789
Alignment:
Q  404 acccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatctca 495  Q
    ||||||||||||| ||||||||||| | |||||||||||||| ||||||| ||||||| | ||||||   || || ||||||||||||||||    
T  15864702 acccatttttcaa-tcactcaaacccacaatgaatcctaagaaaaaacaatagagaaagcattttga---tcatttctctaatgagatctca 15864789  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 3019843 - 3019938
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatatt 474  Q
    ||||||||||||   ||||||||| ||| ||||||||||||||||||||| | |||||||||| | | ||||||| | |||||  |||| ||||||    
T  3019843 tcacaaagaacattttctaatttctaccaatttttcaagtcactcaaacccaaaatgaatcctgatagaaaacaataaagaaagtttttcgatatt 3019938  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 467
Target Start/End: Complemental strand, 17345502 - 17345415
Alignment:
Q  380 cacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttt 467  Q
    |||||||||||||  |||||||| |||||||||| ||||||| || ||   ||||||||| ||||| ||||||  | |||||||||||    
T  17345502 cacaaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaagagaaaacacaaaagaaaactttt 17345415  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 32736982 - 32736939
Alignment:
Q  377 gttcacaaagaacaaactctaatttcaacccatttttcaagtca 420  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||    
T  32736982 gttcataaagaacaaaccctaatttctacccatttttcaagtca 32736939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 47860021 - 47860074
Alignment:
Q  483 taatgagatctcattgtctaaggtgtttgtgaagtgtttctcaacccaaaaacc 536  Q
    ||||||||||||| | | |||| ||||||||||||||||  |||||||||||||    
T  47860021 taatgagatctcactatttaagatgtttgtgaagtgttttccaacccaaaaacc 47860074  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 535
Target Start/End: Complemental strand, 48382382 - 48382321
Alignment:
Q  474 tccttcctctaatgagatctcattgtctaaggtgtttgtgaagtgtttctcaacccaaaaac 535  Q
    |||||||| ||||||||||||| |  | |||||||||||||||||||||  |||| ||||||    
T  48382382 tccttcctttaatgagatctcactacccaaggtgtttgtgaagtgtttccaaacctaaaaac 48382321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 10997071 - 10997111
Alignment:
Q  381 acaaagaacaaactctaatttcaacccatttttcaagtcac 421  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  10997071 acaaataacaaaccctaatttctacccatttttcaagtcac 10997111  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 33690805 - 33690735
Alignment:
Q  383 aaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaa 453  Q
    ||||||||| |||||||||| || || ||||||||||||||||||| |  ||||||||||||| |||||||    
T  33690805 aaagaacaagctctaatttctacacacttttcaagtcactcaaacccacgatgaatcctaagaaaaaacaa 33690735  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 495
Target Start/End: Complemental strand, 28770758 - 28770645
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattcctt 478  Q
    |||||||||||||||||||||||| |||||||||||||||||  || ||    |||||||||||||| ||||||  | || ||||||||| |   |||||    
T  28770758 tcacaaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaaggaaactttttta---tcctt 28770662  T
Q  479 cctctaatgagatctca 495  Q
    |  ||||||||||||||    
T  28770661 cagctaatgagatctca 28770645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 471
Target Start/End: Complemental strand, 41586532 - 41586443
Alignment:
Q  380 cacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgat 471  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||  |  | |||| ||||||||| ||||||  | |||||||||||||||    
T  41586532 cacaaagaacaaactttaatttctacctatttttcaagtcactcactc--agaatggatcctaagagaaaacattaaagaaaactttttgat 41586443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 521
Target Start/End: Original strand, 44732093 - 44732202
Alignment:
Q  408 atttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttgatattccttcctctaatgagatctcattgtctaaggtg 507  Q
    |||||| || ||||||||||| | |||||||||||||| |||||||||||||||  |||||     || ||| |||||||| ||  || | |||||||||    
T  44732093 attttttaaatcactcaaacccacaatgaatcctaagagaaaacaagagagaaagtttttt----atctttcttctaatgaaattccactatctaaggtg 44732188  T
Q  508 tttgtgaagtgttt 521  Q
    ||||||||||||||    
T  44732189 tttgtgaagtgttt 44732202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 15903874 - 15903832
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcac 421  Q
    |||||||||||||| ||||||||| ||||||||||||||||||    
T  15903874 tcacaaagaacaaattctaatttctacccatttttcaagtcac 15903832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 27139915 - 27140005
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaagagagaaaactttttg 469  Q
    |||||||| |||||| |||||||| || ||| ||||||||||||  |||| | |||||||||||| | ||||||| | ||||| |||||||    
T  27139915 tcacaaagtacaaaccctaatttctacacatatttcaagtcacttgaacccaaaatgaatcctaatagaaaacaataaagaaagctttttg 27140005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 37527070 - 37527033
Alignment:
Q  474 tccttcctctaatgagatctcattgtctaaggtgtttg 511  Q
    |||||||||||||||||||||||| || ||||||||||    
T  37527070 tccttcctctaatgagatctcattatccaaggtgtttg 37527033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 102478 - 102436
Alignment:
Q  379 tcacaaagaacaaactctaatttcaacccatttttcaagtcac 421  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||    
T  102478 tcacaaaaaacaaaccctaatttctacccatttttcaagtcac 102436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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