View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4342_high_2 (Length: 377)
Name: NF4342_high_2
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4342_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 32183309 - 32183131
Alignment:
| Q |
124 |
ccggctcgaacaaaaacccctttnnnnnnnccacccctaaacacagaaaccaaccacaagagacatc-taacaaactagaaaatttggaagtgaggccga |
222 |
Q |
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| T |
32183309 |
ccggctcgaacaaaaacccctttaaaaaa-ccacccctaaacatagaaaccaaccacaagagacctcctaacaaactagaaaatccggaagtgaggccga |
32183211 |
T |
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| Q |
223 |
catatacatatgagatgccacaagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaaacag |
302 |
Q |
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| T |
32183210 |
catatacatgtgagatgccacaagaatatccctgcctcgccacaaacaacgctcagcctcaccacaagccaccaaaacag |
32183131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 124 - 302
Target Start/End: Complemental strand, 15859127 - 15858949
Alignment:
| Q |
124 |
ccggctcgaacaaaaacccctttnnnnnnnccacccctaaacacagaaaccaaccacaagagacatc-taacaaactagaaaatttggaagtgaggccga |
222 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
15859127 |
ccggctcgaacaaaaacccctttaaaaaa-ccacccctaaacaaagaaaccaaccacaagagacatcctaacaaactagaaaatccggaagtgaggccga |
15859029 |
T |
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| Q |
223 |
catatacatatgagatgccacaagaatatccctgcctcaccacaaacaacgctcagcctcaccacaagccaccaaaacag |
302 |
Q |
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| T |
15859028 |
catatacatgtgagattccacaagaatatccctgccttaccacaaacaacgcgcagcctcaccacaagccaccaaaacag |
15858949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 38086513 - 38086624
Alignment:
| Q |
120 |
aactccggctcgaacaaaaacccctttnnnnnnnccacccctaaacacagaaaccaaccacaagagacat-ctaacaaactagaaaatttggaagtgagg |
218 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| || | || |||||||||||| ||||||||| |
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| T |
38086513 |
aactctggctcgaacaaaaacccctttaaaaaa-ccacccctaaacaaagaaatcaaccacaagagaaatcccaaaaaactagaaaatccagaagtgagg |
38086611 |
T |
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| Q |
219 |
ccgacatatacat |
231 |
Q |
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| T |
38086612 |
ccgacatatacat |
38086624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 17792730 - 17792771
Alignment:
| Q |
73 |
tgattctgttggatcccttaaaaaacttgaagatttgaatct |
114 |
Q |
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| T |
17792730 |
tgattccgttggactccttaaaaaacttgaagatttgaatct |
17792771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 17803378 - 17803414
Alignment:
| Q |
81 |
ttggatcccttaaaaaacttgaagatttgaatcttaa |
117 |
Q |
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|||||| |||| ||||||||||||||||||||||||| |
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| T |
17803378 |
ttggattccttgaaaaacttgaagatttgaatcttaa |
17803414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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