View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4342_high_3 (Length: 374)

Name: NF4342_high_3
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4342_high_3
NF4342_high_3
[»] chr3 (1 HSPs)
chr3 (13-374)||(30637321-30637684)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 30637321 - 30637684
Alignment:
Q  13 agaagtaatattgactttctcttattttctttggtttcttgtggcgaagctatgatcttaccaagttttttcattggttccactcaaagttatggtcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30637321 agaagtaatattgactttctcttattttctttggtttcttgtggtgaagctatgatcttaccaagttttttcattggttccactcaaagttatggtcata 30637420  T
Q  113 gccaaacgnnnnnnngacactacttatgaatgatctttaatttcttttttgtctgttttaataagattggggaccattgaattctaatcaatcaaacttc 212  Q
    ||||||||       ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30637421 gccaaacgtttttttgacactacttatgaatggtctttaatttcttttt-gtctgttttaataagattggggaccattgaattctaatcaatcaaacttc 30637519  T
Q  213 aa---gaacaagaccgggatttgctctttcttttgaaaatagcatataatgacacaccgctcacatacagttgtcgtaaaagaatctaagttagaagatt 309  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30637520 aattagaacaagaccgggatttgctctttcttttgaaaatagcatataatgacacaccgctcacatacagttgtcgtaaaagaatctaagtaagaagatt 30637619  T
Q  310 tccagtttatctaatttgcttatggacaatgttggctatagttcacacattttaattgtgaggaa 374  Q
    | |||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||    
T  30637620 ttcagtttatctaatttgttcatggataatgttggctatagttcacacattttaaatgtgaggaa 30637684  T

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