View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4342_high_6 (Length: 334)
Name: NF4342_high_6
Description: NF4342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4342_high_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 21371855 - 21371532
Alignment:
| Q |
11 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21371855 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacatagtactc |
21371756 |
T |
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| Q |
111 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371755 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
21371656 |
T |
|
| Q |
211 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgtggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371655 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgcggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
21371556 |
T |
|
| Q |
311 |
aaccgaagcgactccggcgttacc |
334 |
Q |
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|||||||||||||||||||||||| |
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| T |
21371555 |
aaccgaagcgactccggcgttacc |
21371532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 21385702 - 21386025
Alignment:
| Q |
11 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21385702 |
caaaggcataataagctgagtggccccaccacccatattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacatagtactc |
21385801 |
T |
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| Q |
111 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385802 |
atccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcattttcaacaaatgacatacaaaaca |
21385901 |
T |
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| Q |
211 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgtggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385902 |
ctgttggtgctgttagcattataaggaatgcacaaccataacgcggacctaataggtcacaaattgcacccattgcaagccttgagaatatactacctga |
21386001 |
T |
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| Q |
311 |
aaccgaagcgactccggcgttacc |
334 |
Q |
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|||||||||||||||||||||||| |
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| T |
21386002 |
aaccgaagcgactccggcgttacc |
21386025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 48674164 - 48674302
Alignment:
| Q |
45 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaag |
144 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||| ||||||||||||||| | |||||||| |||||||||| |
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| T |
48674164 |
atattaccccaaccagcagcagtcccattaacaagtccaataatcttcctattaaacat---actcatccaatattggtaagaaacaaaagttgccaaag |
48674260 |
T |
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| Q |
145 |
agaaaccaatcataaacctaactgctatataaccagcagcat |
186 |
Q |
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||||||||||||| ||||||||||||||| | |||| ||||| |
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| T |
48674261 |
agaaaccaatcatgaacctaactgctatacatccagaagcat |
48674302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 36199965 - 36199810
Alignment:
| Q |
93 |
ctattaaacattgtactcatccaatattgacatgaaacaaatgttgccaaagagaaaccaatcataaacctaactgctatataaccagcagcat-tttca |
191 |
Q |
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||||||||| | ||||| ||| |||||| || |||||||| ||||| ||||| ||||||||||| ||||||||| ||||||| |||| ||||| |||| |
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| T |
36199965 |
ctattaaacgtcttactcgtccgatattggcaagaaacaaaagttgctaaagacaaaccaatcatgaacctaactactatatatccagaagcatcattca |
36199866 |
T |
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| Q |
192 |
acaaatgacatacaaaacactgttggtgctgttagcattataaggaatgcacaaccata |
250 |
Q |
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|||||| ||||||||| ||||||| || | |||||||||||| || ||||||||||| |
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| T |
36199865 |
--aaatgaaatacaaaac-ctgttggagcagatagcattataagtaaagcacaaccata |
36199810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 691421 - 691479
Alignment:
| Q |
45 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacat |
103 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| || | ||||||||| |
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| T |
691421 |
atattaccccaaccagcagcagtcccattgacaagtccaataatcttccaattaaacat |
691479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 693213 - 693271
Alignment:
| Q |
45 |
atattaccccaaccagcagcagtaccattagcaagtccaataattttactattaaacat |
103 |
Q |
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|||||||||| |||||||||||| |||||| ||||||||| ||| | ||||||||||| |
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| T |
693213 |
atattaccccgaccagcagcagtcccattaacaagtccaacaatcctcctattaaacat |
693271 |
T |
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