View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4343-Insertion-1 (Length: 1020)

Name: NF4343-Insertion-1
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4343-Insertion-1
NF4343-Insertion-1
[»] chr8 (2 HSPs)
chr8 (70-410)||(6868397-6868729)
chr8 (958-1020)||(6867894-6867956)
[»] chr1 (1 HSPs)
chr1 (20-102)||(47149990-47150072)
[»] chr7 (6 HSPs)
chr7 (958-1020)||(14080813-14080875)
chr7 (958-1020)||(14390841-14390903)
chr7 (262-326)||(14080228-14080292)
chr7 (262-326)||(14390256-14390320)
chr7 (108-222)||(14080018-14080121)
chr7 (108-222)||(14390046-14390149)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 70 - 410
Target Start/End: Complemental strand, 6868729 - 6868397
Alignment:
Q  70 aggtatgttattttatttgatttgattcttttcctcagagccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacgca 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6868729 aggtatgttatttgatttgatttgattcttttcctcagagccattttta-gccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacaca 6868631  T
Q  170 cacgacacgataagaagggctgaacttatacacaaccattattaaacacaccacataatcactttgcatactccaccaaacaaattatctctatggcttc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  6868630 cacgacacgataagaagggctgaacttatacacaaccattattaaacacaccacataatcactttgcatactccaccaaaccaatttcctctatggcttc 6868531  T
Q  270 tcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctctnnnnnnnccacttctccatcaaaacccacttccctcccaaat 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||| |||||| |||    
T  6868530 tcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctct-aaaaaaccacttctccatc-aaacccactt-cctccc-aat 6868435  T
Q  370 ctcaaataccccccaaacacaaatccaccccttatccaaaa 410  Q
    |||||||| ||||||||||||||||   |||||||||||||    
T  6868434 ctcaaata-cccccaaacacaaatc--acccttatccaaaa 6868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 958 - 1020
Target Start/End: Complemental strand, 6867956 - 6867894
Alignment:
Q  958 gttttagacagtgtttctattgcaactactcataggaaaactcttgagaaggctggtgttata 1020  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6867956 gttttagacagtgtttctattgcaactactcataggaaaactcttgagaaggctggtgttata 6867894  T

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Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 47149990 - 47150072
Alignment:
Q  20 ggttctggagaaatagcttattcatctggaaccaccaacgtttctagctcaggtatgttattttatttgatttgattcttttc 102  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  47149990 ggttctggagaaatagcttcttcatctggaaacactaacgtttctagctcaggtatgttattttctttgatttgattcatttc 47150072  T

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Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 958 - 1020
Target Start/End: Original strand, 14080813 - 14080875
Alignment:
Q  958 gttttagacagtgtttctattgcaactactcataggaaaactcttgagaaggctggtgttata 1020  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  14080813 gttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttata 14080875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 958 - 1020
Target Start/End: Original strand, 14390841 - 14390903
Alignment:
Q  958 gttttagacagtgtttctattgcaactactcataggaaaactcttgagaaggctggtgttata 1020  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  14390841 gttttagacagtgtttctattgcaactactcataggaagacacttgagaaggctggtgttata 14390903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 14080228 - 14080292
Alignment:
Q  262 atggcttctcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctc 326  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  14080228 atggcttctcttctcaacggcagcgtttcttccttacacccacaacccactcaaaccagcttctc 14080292  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 14390256 - 14390320
Alignment:
Q  262 atggcttctcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctc 326  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  14390256 atggcttctcttctcaacggcagcgtttcttccttacacccacaacccactcaaaccagcttctc 14390320  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 14080018 - 14080121
Alignment:
Q  108 agccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacgcacacgacacgataagaagggctgaacttatacacaacca 207  Q
    ||||||||| ||||||||||||||    |||||||||||||| |||||    ||||||| ||||||||| ||||||   || ||||||||||||||||||    
T  14080018 agccattttgatgccaaaacgggt----ccccacacaaactagtacgt----gtgtgacacacacgacatgataag---ggttgaacttatacacaacca 14080106  T
Q  208 ttattaaacacacca 222  Q
    |||||||||||||||    
T  14080107 ttattaaacacacca 14080121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 14390046 - 14390149
Alignment:
Q  108 agccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacgcacacgacacgataagaagggctgaacttatacacaacca 207  Q
    ||||||||| ||||||||||||||    |||||||||||||| |||||    ||||||| ||||||||| ||||||   || ||||||||||||||||||    
T  14390046 agccattttgatgccaaaacgggt----ccccacacaaactagtacgt----gtgtgacacacacgacatgataag---ggttgaacttatacacaacca 14390134  T
Q  208 ttattaaacacacca 222  Q
    |||||||||||||||    
T  14390135 ttattaaacacacca 14390149  T

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