View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4343-Insertion-10 (Length: 122)
Name: NF4343-Insertion-10
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4343-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 6e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 21776941 - 21777055
Alignment:
| Q |
8 |
cgaatgattccaaagctttctataattttctttacatgacactaatccttgcagggtacctcatgataatgatcatagtacaaaaatgtttcaactttac |
107 |
Q |
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| T |
21776941 |
cgaatgattccaaagctttctataattttctttacatgactttaatccttgcagggtacctcatgataatgatcatagtacaaaaatgtttcaactttac |
21777040 |
T |
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| Q |
108 |
tcgtagtgagtatta |
122 |
Q |
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| T |
21777041 |
taagagtgagtatta |
21777055 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 19713457 - 19713345
Alignment:
| Q |
10 |
aatgattccaaagctttctataattttctttacatgacactaatccttgcagggtacctcatgataatgatcatagtacaaaaatgtttcaactttactc |
109 |
Q |
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||||||||||||||||| |||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
19713457 |
aatgattccaaagctttttataatttcctttacatgtctttaatccttgcagggttcctcatgataatgatcatagtgcaaacatgtttcaactttacta |
19713358 |
T |
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| Q |
110 |
gtagtgagtatta |
122 |
Q |
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| T |
19713357 |
agagtgagtatta |
19713345 |
T |
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