View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4343-Insertion-2 (Length: 919)

Name: NF4343-Insertion-2
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4343-Insertion-2
NF4343-Insertion-2
[»] chr8 (14 HSPs)
chr8 (8-919)||(31655944-31656856)
chr8 (8-440)||(31630079-31630510)
chr8 (547-841)||(31651256-31651543)
chr8 (8-177)||(31651884-31652053)
chr8 (594-688)||(31645987-31646081)
chr8 (81-177)||(31646352-31646448)
chr8 (669-773)||(34212308-34212419)
chr8 (334-431)||(31637358-31637455)
chr8 (477-660)||(31637098-31637283)
chr8 (8-156)||(31637687-31637835)
chr8 (331-427)||(31646199-31646295)
chr8 (334-427)||(31651658-31651751)
chr8 (595-694)||(31629796-31629897)
chr8 (850-895)||(31651182-31651227)
[»] chr3 (1 HSPs)
chr3 (669-895)||(4329338-4329568)
[»] chr6 (3 HSPs)
chr6 (669-884)||(32397976-32398195)
chr6 (669-895)||(12758680-12758910)
chr6 (669-773)||(14653892-14654003)
[»] chr7 (2 HSPs)
chr7 (669-895)||(21452370-21452600)
chr7 (669-895)||(12002520-12002751)
[»] chr2 (2 HSPs)
chr2 (731-895)||(20917354-20917515)
chr2 (669-723)||(20921105-20921159)
[»] chr5 (2 HSPs)
chr5 (8-152)||(9105015-9105159)
chr5 (335-424)||(9105454-9105543)


Alignment Details
Target: chr8 (Bit Score: 841; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 841; E-Value: 0
Query Start/End: Original strand, 8 - 919
Target Start/End: Complemental strand, 31656856 - 31655944
Alignment:
Q  8 acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31656856 acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc 31656757  T
Q  108 ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttttaagtattgggtgaaaaataacatactatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31656756 ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttttaagtattgggtgaaaaataacatactatc 31656657  T
Q  208 tcagcatcaaaagacaactgaaaacacttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31656656 tcagcatcaaaagacaactgaaaacacttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaa 31656557  T
Q  308 acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  31656556 acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtca 31656457  T
Q  408 agaaatgttccagagcttgttcgtatgctaaatacatcaatgaagtggcaatgacgatccaaacaagtcaaacgagatttatattcaacattgaactcaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31656456 agaaatgttccagagcttgttcgtatgctaaatacatcaatgaagtggcaatgacgatccaaacaagtcaaacgagatttatattcaacattgaactcaa 31656357  T
Q  508 gggatacttgataaagaattttgtggttgggnnnnnnnntctaacctgctgttcagactctttcctgttttctcgtcaataacttccgatttatgcatac 607  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31656356 gggatacttgataaagaattttgtggttggaaaaaaaaatctaacctgctgttcagactctttcctgttttctcgtcaataacttccgatttatgcatac 31656257  T
Q  608 taggctttgctatattgattagatgttcgcattcctcttttgtctgctcagatcaatcagtttagccttagcatttaggaaatggaaatttgtaacatta 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31656256 taggctttgctatattgattagatgttcgcattcctcttttgtctgctcagatcaatcagtttagccttagcatttaggaaatggaaacttgtaacatta 31656157  T
Q  708 aaactatatttaggggcctaccttgaactatgattacacaatatataaagaaataatgttaaaacttaaaactgatattctaagtttaaaaatttgcatc 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  ||    
T  31656156 aaactatatttaggggcctaccttgaactatgattacacaatatataaagaaataatgttaaaacttaaaactgatattctaagtttaaaactctgtctc 31656057  T
Q  808 gcttctaaatttctgcaggttatgagtgaagtcacattcatc-ttttttccttcatgatattcaaatctttcctaaaccttacaaccatattcaccttag 906  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31656056 gcttctaaatttctgcaggttatgagtgaattcacattcatctttttttccttcatgatattcaaatctttcctaaaccttacaaccatattcaccttag 31655957  T
Q  907 aaaatattgctga 919  Q
    |||||||| ||||    
T  31655956 aaaatattactga 31655944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 8 - 440
Target Start/End: Complemental strand, 31630510 - 31630079
Alignment:
Q  8 acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc 107  Q
    ||||||||||||||||||||||||| ||||||||| ||| |  |||| || |   ||||  |||||||||  ||||||| ||||||||||||||||||||    
T  31630510 acaggtacatcagcattgttgctatacgctgacctccattcacagtattataatcatccgcaaagtagtctaaatgaggatcatacttttgtccaacttc 31630411  T
Q  108 ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttttaagtattgggtgaaaaataacatactatc 207  Q
    |||| |||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||| |    
T  31630410 ataacggagaacattaaagctttcgccgttctctgcataatgtgaaacacggctcaagtaatggttgttt-aagtatatgatgaaaaataacatactacc 31630312  T
Q  208 tcagcatcaaaagacaactgaaaacacttcgttgatacatggttgaatcaaaaagcactagcaggagcatcaagccttagtttcttgaacaaaggaaaaa 307  Q
    |||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31630311 tcagcatcaaaagacaacagaaaacacttggttaatacatggttgagtcaaaaagcattagcaggagcatcaagccttagtttcttgaacaaaggaaaaa 31630212  T
Q  308 acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  31630211 acaaaaggcagaaagaacgtgttacgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtca 31630112  T
Q  408 agaaatgttccagagcttgttcgtatgctaaat 440  Q
    ||||| ||||||||||||||||||| |||||||    
T  31630111 agaaaagttccagagcttgttcgtacgctaaat 31630079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 547 - 841
Target Start/End: Complemental strand, 31651543 - 31651256
Alignment:
Q  547 tctaacctgctgttcagactctttcctgttttctcgtcaataacttccgatttatgcatactaggctttgctatattgattagatgttcgcattcctctt 646  Q
    ||||||| ||||| || ||  |||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31651543 tctaaccggctgtccacaccatttcctgtttcctcgtcaataacagccgatttatgcatactaggctttgctatattgattagatgttcacattcctctt 31651444  T
Q  647 ttgtctgctcagatcaatcagtttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggcct-accttgaactatgattaca 745  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||| |||| |    
T  31651443 ttgtctgctcagatcaatcagcttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaaccctgaactataattaaa 31651344  T
Q  746 caatatataaagaaataatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttct-aaatttctgcaggttatgagtgaagtca 841  Q
    ||   |||||  | ||||||       |||||||||||||||||||||||||||| ||| || ||||| ||| ||||||||||||||||||||||||    
T  31651343 ca--gtataagcatataatg-------ttaaaactgatattctaagtttaaaaatctgcctcacttctaaaacttctgcaggttatgagtgaagtca 31651256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 31652053 - 31651884
Alignment:
Q  8 acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc 107  Q
    ||||||||||||||||||||||||| |||||||| ||||   |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  31652053 acaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgaggttcatacttttgtccaacttc 31651954  T
Q  108 ataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt 177  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  31651953 ataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgttt 31651884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 594 - 688
Target Start/End: Complemental strand, 31646081 - 31645987
Alignment:
Q  594 cgatttatgcatactaggctttgctatattgattagatgttcgcattcctcttttgtctgctcagatcaatcagtttagccttagcatttaggaa 688  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |||||||| |||| ||||    
T  31646081 cgatttatgcatactaggcttggctatattgattagatgttcacattcctcttttgtctgcttagatcaatcagctaagccttagtatttgggaa 31645987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 31646448 - 31646352
Alignment:
Q  81 atgaggttcatacttttgtccaacttcataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt 177  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  ||  || ||||||||||||    
T  31646448 atgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaacatagccaaattaatggttgttt 31646352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 669 - 773
Target Start/End: Original strand, 34212308 - 34212419
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggcct-------accttgaactatgattacacaatatataaagaaat 761  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |       ||| |||||||||||| || |||||||||| ||||    
T  34212308 ttagccttagcatttagaaaatggaaatttgtaacattaaaactatatttaggggattaagattaaccctgaactatgatttcaaaatatataaacaaat 34212407  T
Q  762 aatgttaaaact 773  Q
    ||||||||||||    
T  34212408 aatgttaaaact 34212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 31637455 - 31637358
Alignment:
Q  334 cacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagcttgttcgt 431  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||  |||| |||| | ||| ||||||||||||||||||    
T  31637455 cacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgataaaagttccagagcttgttcgt 31637358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 477 - 660
Target Start/End: Complemental strand, 31637283 - 31637098
Alignment:
Q  477 aaacgagatttatattcaacattgaactcaagggatacttgataaagaattttgtggttgggnnnnnnnn--tctaacctgctgttcagactctttcctg 574  Q
    ||||||||||||||||||||||||||||||    |  ||||||||||||||||| ||| ||           |||||||||||||||| |||||||||||    
T  31637283 aaacgagatttatattcaacattgaactcattatacgcttgataaagaattttggggtcggaaaaagaaaaatctaacctgctgttcacactctttcctg 31637184  T
Q  575 ttttctcgtcaataacttccgatttatgcatactaggctttgctatattgattagatgttcgcattcctcttttgtctgctcagat 660  Q
    || | || |||| |||   |||||| |||| |  |||||| |||||||||||||||||||| ||||||||||||| ||||| ||||    
T  31637183 ttgtatcatcaacaacagtcgatttctgcacatcaggcttggctatattgattagatgttcacattcctcttttgcctgctaagat 31637098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 31637835 - 31637687
Alignment:
Q  8 acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc 107  Q
    |||||||||||| |||||||||||| |||| |||  ||||| ||||| ||| |  |||   ||||||||||  ||||   || |||||||||||||||||    
T  31637835 acaggtacatcaacattgttgctatacgctcacccccatgcttagtattaacctcatcttcaaagtagtcagtatgaaaatcgtacttttgtccaacttc 31637736  T
Q  108 ataatggagaacattaaagctttcgccatgctctgcatattgtgaaaca 156  Q
    ||||||||||| ||||| |  ||||||||||||||||| || |||||||    
T  31637735 ataatggagaatattaacgtcttcgccatgctctgcatgttttgaaaca 31637687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 31646295 - 31646199
Alignment:
Q  331 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagcttgt 427  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| ||||  |||| |||  | ||| ||||||||||||||    
T  31646295 acgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcctctgttgataaaagttccagagcttgt 31646199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 31651751 - 31651658
Alignment:
Q  334 cacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagcttgt 427  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||  ||||||||  ||||| |||| | | |||||| | ||||||||||||    
T  31651751 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgt 31651658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 694
Target Start/End: Complemental strand, 31629897 - 31629796
Alignment:
Q  595 gatttatgcatactaggctttgctatattgattagatgttcgcattcctcttttgtctgctcagatcaatcag-tttagcctta-gcatttaggaaatgg 692  Q
    ||||| |||||||| ||||| ||| |||||||||||||||| |||||||  |||||||||| ||||||||||| |  ||||||| |||||| ||||||||    
T  31629897 gatttttgcatacttggcttggctgtattgattagatgttcacattccttctttgtctgcttagatcaatcagataaagccttaggcatttgggaaatgg 31629798  T
Q  693 aa 694  Q
    ||    
T  31629797 aa 31629796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 850 - 895
Target Start/End: Complemental strand, 31651227 - 31651182
Alignment:
Q  850 ttttttccttcatgatattcaaatctttcctaaaccttacaaccat 895  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||    
T  31651227 ttttttccctcatgatattcaaatatttcctaaaccatacaaccat 31651182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 669 - 895
Target Start/End: Original strand, 4329338 - 4329568
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggccta-------ccttgaactatgattacacaatatataaagaaat 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||       || |||||||||||| ||||||||||||| ||||    
T  4329338 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaagattaaccctgaactatgatttcacaatatataaacaaat 4329437  T
Q  762 aatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttctaaa-tttctgcaggttat--gagtgaagtcacattcatcttttttc-c 857  Q
    ||||||||||||       |||||||||||||||||| |  || ||||||||||| ||||||||||||||  |||||||||||||||| ||||||||  |    
T  4329438 aatgttaaaact-------gatattctaagtttaaaactcagcctcgcttctaaaatttctgcaggttatatgagtgaagtcacattcctctttttttac 4329530  T
Q  858 ttcatgatattcaaatctttcctaaaccttacaaccat 895  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  4329531 ttcatgatattcaaatctttcctaaaccacacaaccat 4329568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 6e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 669 - 884
Target Start/End: Complemental strand, 32398195 - 32397976
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggccta-------ccttgaactatgattacacaatatataaagaaat 761  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||       || |||||||||||| ||||||||||||| ||||    
T  32398195 ttagccttagcatttaggaaatggaaattcgtaacattaaaactatatttaggggattaagattaaccctgaactatgatttcacaatatataaacaaat 32398096  T
Q  762 aatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttctaaa-tttctgcaggttat--gagtgaagtcacattcatcttttttc-c 857  Q
    ||||||||||||       |||||||||||||||||| |  || ||||||||||| ||||||||||||||  |||||||||||||||| ||||||||  |    
T  32398095 aatgttaaaact-------gatattctaagtttaaaactcagcctcgcttctaaaatttctgcaggttatatgagtgaagtcacattcctctttttttac 32398003  T
Q  858 ttcatgatattcaaatctttcctaaac 884  Q
    |||||||||||||||||||||||||||    
T  32398002 ttcatgatattcaaatctttcctaaac 32397976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 669 - 895
Target Start/End: Complemental strand, 12758910 - 12758680
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggcct-------accttgaactatgattacacaatatataaagaaat 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |       ||| |||||||||||| ||||||||||||| ||||    
T  12758910 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaagattaaccctgaactatgatttcacaatatataaacaaat 12758811  T
Q  762 aatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttct-aaatttctgcaggt--tatgagtgaagtcacattcat-cttttttcc 857  Q
    ||||       |||||||||||||||||||||||||| |  || |||||| | |||||||| |||||  ||||||||||||||||||| |  |||||| |    
T  12758810 aatg-------ttaaaactgatattctaagtttaaaactcagcctcgcttataaaatttctacaggttatatgagtgaagtcacattcctatttttttac 12758718  T
Q  858 ttcatgatattcaaatctttcctaaaccttacaaccat 895  Q
    ||||||| ||||||||||||||||||||  ||||||||    
T  12758717 ttcatgaaattcaaatctttcctaaaccacacaaccat 12758680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 669 - 773
Target Start/End: Original strand, 14653892 - 14654003
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggcct-------accttgaactatgattacacaatatataaagaaat 761  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |       ||| |||||||||||| || |||||||||| ||||    
T  14653892 ttagccttagcatttagaaaatagaaatttgtaacattaaaactatatttaggggattaagattaaccctgaactatgatttcaaaatatataaacaaat 14653991  T
Q  762 aatgttaaaact 773  Q
    ||||||||||||    
T  14653992 aatgttaaaact 14654003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 669 - 895
Target Start/End: Original strand, 21452370 - 21452600
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggccta-------ccttgaactatgattacacaatatataaagaaat 761  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||       || |||||||||||| ||||||||||||| ||||    
T  21452370 ttagccttagcatttaggaaatggaaatttgtaacattaaaactgtatttaggggattaagattaaccctgaactatgatttcacaatatataaacaaat 21452469  T
Q  762 aatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttctaaa-tttctgcaggttat--gagtgaagtcacattcatcttttttc-c 857  Q
    ||||||||||||       |||||||||||||||||| |  || || |||||||| ||||||||||||||  |||||||||||||||| ||||||||  |    
T  21452470 aatgttaaaact-------gatattctaagtttaaaactcagcctcacttctaaaatttctgcaggttatatgagtgaagtcacattcctctttttttac 21452562  T
Q  858 ttcatgatattcaaatctttcctaaaccttacaaccat 895  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  21452563 ttcatgatattcaaatctttcctaaaccacacaaccat 21452600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 669 - 895
Target Start/End: Original strand, 12002520 - 12002751
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggcct-------accttgaactatgattacacaatatataaagaaat 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |       ||| |||||||||||| ||||||||||||| ||||    
T  12002520 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttaggggattaagattaaccatgaactatgatttcacaatatataaacaaat 12002619  T
Q  762 aatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttct-aaatttctgcaggt--tatgagtgaagtcacattcatc--ttttttc 856  Q
    ||||       |||||||||||||| ||||||||||| |  || |||||||| ||| || |||||||  ||||||||||||||||||| ||  ||||||     
T  12002620 aatg-------ttaaaactgatattttaagtttaaaactcagcctcgcttctaaaaattttgcaggttatatgagtgaagtcacattcctctttttttta 12002712  T
Q  857 cttcatgatattcaaatctttcctaaaccttacaaccat 895  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  12002713 cttcatgatattcaaatctttcctaaaccacacaaccat 12002751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 731 - 895
Target Start/End: Complemental strand, 20917515 - 20917354
Alignment:
Q  731 tgaactatgattacacaatatataaagaaataatgttaaaacttaaaactgatattctaagtttaaaaatttgcatcgcttctaaa-tttctgcaggtta 829  Q
    |||||||||||| ||||||||||||| |||||||||||||| |       |||||||||||||||||| |  || ||||||||||| ||||| |||||||    
T  20917515 tgaactatgatttcacaatatataaacaaataatgttaaaagt-------gatattctaagtttaaaactcagcctcgcttctaaaatttctacaggtta 20917423  T
Q  830 t--gagtgaagtcacattcatcttttttc-cttcatgatattcaaatctttcctaaaccttacaaccat 895  Q
    |  |||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||  ||||||||    
T  20917422 tatgagtgaagtcgcattcctctttttttacttcatgatattcaaatctttcctaaaccacacaaccat 20917354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 669 - 723
Target Start/End: Complemental strand, 20921159 - 20921105
Alignment:
Q  669 ttagccttagcatttaggaaatggaaatttgtaacattaaaactatatttagggg 723  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20921159 ttagccttagcatttaggaaatggaaatttgtaatattaaaactatatttagggg 20921105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 9105015 - 9105159
Alignment:
Q  8 acaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaacttc 107  Q
    ||||||||||||| |  |||||||||||||||||  ||| | | ||  ||||   ||| | |||||||||||| ||||| ||||||||||||||||||||    
T  9105015 acaggtacatcagtaccgttgctatgcgctgacccccattctttgtgttaaattcatcaagaaagtagtcatagtgaggctcatacttttgtccaacttc 9105114  T
Q  108 ataatggagaacattaaagctttcgccatgctctgcatattgtga 152  Q
    |||||| ||||| | ||  | ||| || |||||||||||||||||    
T  9105115 ataatgtagaacttgaagtccttcaccgtgctctgcatattgtga 9105159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 9105454 - 9105543
Alignment:
Q  335 acctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcacctcctttgtcaagaaatgttccagagct 424  Q
    ||||||||| ||||||||||| || || ||| ||||||||||||| |||||||| | ||||| |||  || | |||||||||||||||||    
T  9105454 acctacaggaataaaagtaaagtcggcaatttttttctcaatattcctcacaatcttatcacgtcccctggccagaaatgttccagagct 9105543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University