View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4343-Insertion-5 (Length: 461)

Name: NF4343-Insertion-5
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4343-Insertion-5
NF4343-Insertion-5
[»] chr8 (4 HSPs)
chr8 (36-413)||(18038776-18039162)
chr8 (201-413)||(18030330-18030556)
chr8 (246-315)||(41829458-41829528)
chr8 (263-315)||(24409226-24409278)
[»] scaffold0112 (1 HSPs)
scaffold0112 (181-315)||(24969-25103)
[»] chr1 (6 HSPs)
chr1 (247-315)||(5493282-5493350)
chr1 (263-311)||(5489587-5489635)
chr1 (263-314)||(39015487-39015538)
chr1 (246-315)||(10765767-10765836)
chr1 (263-315)||(5494119-5494171)
chr1 (263-315)||(38832849-38832901)
[»] chr7 (1 HSPs)
chr7 (246-315)||(43071697-43071766)
[»] chr5 (1 HSPs)
chr5 (263-315)||(19516624-19516676)
[»] chr4 (4 HSPs)
chr4 (276-324)||(35603203-35603251)
chr4 (263-315)||(30925384-30925436)
chr4 (263-315)||(30926002-30926054)
chr4 (263-315)||(49605911-49605963)
[»] chr3 (2 HSPs)
chr3 (247-315)||(43020039-43020107)
chr3 (276-315)||(37521860-37521899)
[»] chr6 (1 HSPs)
chr6 (246-315)||(11313985-11314054)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 36 - 413
Target Start/End: Original strand, 18038776 - 18039162
Alignment:
Q  36 tagaaacgacacaattaagatttttcaaataaaataaaatagcatccagtaaaacactttcaattgtatcgtggatatgttaaagttgaattcaaccgta 135  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18038776 tagaaacgacacaattaagaattttcaaataaaataaaatagcatccagtaaaacactttcaattgtatcgtggatatgttaaagttgaattcaaccgta 18038875  T
Q  136 aacatggatatatcaaacagtttccgaaccnnnnnnncagtgataccatatatcagaaaaatacataattacccttacatttaaatacatattgaattaa 235  Q
    |||||||||||  |||||||||||||||||       | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  18038876 aacatggatat--caaacagtttccgaaccaaaaaaac-gtgataccatatatcaggaaaatacataattacccttacatttaaatacatattgaactaa 18038972  T
Q  236 tcgcattggatttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtttg--------------taaa 321  Q
    | | ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||               |||    
T  18038973 tggaattggatttttagtaaatgacagatgg-agtagacgtgttaacttactccttcatatttttgggttggagtaagtttgcaaacccttaatataaaa 18039071  T
Q  322 ccctaaatatttcctatattgaactatacatcgatggatcaaattatcttgactcattttatttcatccttttgatgcatacattgacaagg 413  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18039072 ccctaaatatttcctata-tgaactatacattgttggatcaaattatcttgactcattttatttcatccttttgatgcatacattgacaagg 18039162  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 201 - 413
Target Start/End: Original strand, 18030330 - 18030556
Alignment:
Q  201 taattacccttacatttaaatacatattgaattaatcgcattggatttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatattttt 300  Q
    ||||||||||| || ||||||||||||||||  | | | ||||  ||||||||||||| || |||| ||||||| || |||||||||| |||||||||||    
T  18030330 taattacccttgcacttaaatacatattgaaccagtggaattgagtttttagtaaatggcaagtgggagtagacttgttaacttactctttcatattttt 18030429  T
Q  301 gggttg--gagtaagtttgtaa--------------accctaaatatttcctatattgaactatacatcgatggatcaaattatcttgactcattttatt 384  Q
    |||| |  ||||||||| | ||              |||| ||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||    
T  18030430 gggtggaagagtaagttagcaagcccctaatataaaacccaaaatatttcctatat-gaactatacattgttggatctaattatcttgactcattttatt 18030528  T
Q  385 tcatccttttgatgcatacattgacaagg 413  Q
    |||||| |||||||| |||||||| ||||    
T  18030529 tcatcc-tttgatgcgtacattgataagg 18030556  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 41829458 - 41829528
Alignment:
Q  246 tttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttg-gagtaagtt 315  Q
    ||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |||||||| || |||||||||    
T  41829458 tttttggtaaaagacaagtgggagtagacttgctaacttactccttcatgtttttggggtgagagtaagtt 41829528  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 24409278 - 24409226
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||| | ||||||||||||||||||| ||||||||| ||||||||||    
T  24409278 gtgggagtaggcttgctaacttactccttcatgtttttgggtgggagtaagtt 24409226  T

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Target: scaffold0112 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 315
Target Start/End: Complemental strand, 25103 - 24969
Alignment:
Q  181 ccatatatcagaaaaatacataattacccttacatttaaatacatattgaattaatcgcattggatttttagtaaatgacaggtggaagtagacgtgcta 280  Q
    ||||||||| | ||||||||||||||| ||| ||||||||||||||||||| || | | ||||  |||||||||||||||| |||| ||||||  |||||    
T  25103 ccatatatctggaaaatacataattactcttgcatttaaatacatattgaactagtggaattgagtttttagtaaatgacaagtgggagtagatttgcta 25004  T
Q  281 acttactccttcatatttttgggttggagtaagtt 315  Q
    ||||||||||  || |||||| || || |||||||    
T  25003 acttactcctgtatgtttttgagtgggtgtaagtt 24969  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 5493350 - 5493282
Alignment:
Q  247 ttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||| |||| |||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  5493350 ttttggtaaaagacaagtgggagtagacttgctaacttactgcttcatatttttgggttggagtaagtt 5493282  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 5489635 - 5489587
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagta 311  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  5489635 gtgggagtagacttgctaacttactccttcatatttttggattggagta 5489587  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 39015487 - 39015538
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagt 314  Q
    |||| ||||||| |||||||||||||||||||  |||||||| |||||||||    
T  39015487 gtgggagtagacttgctaacttactccttcatgattttgggtgggagtaagt 39015538  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 10765836 - 10765767
Alignment:
Q  246 tttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||||||||||   || |||| ||||| | ||||||||||||||||||| ||||| ||| ||||||||||    
T  10765836 tttttagtaaaaatcaagtgggagtaggcttgctaacttactccttcatgtttttaggtgggagtaagtt 10765767  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 5494119 - 5494171
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||| | ||||||||||||||||||| ||||||||| ||| ||||||    
T  5494119 gtgggagtaggcttgctaacttactccttcatgtttttgggtgggaataagtt 5494171  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 38832901 - 38832849
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||| | ||||||||||||||||||| ||||| ||| ||||||||||    
T  38832901 gtgggagtaggcttgctaacttactccttcatgtttttaggtgggagtaagtt 38832849  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 43071697 - 43071766
Alignment:
Q  246 tttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    ||||||||||||| || |||| |||||   ||||||||||||||||||| |||||||||  |||||||||    
T  43071697 tttttagtaaatggcaagtgggagtagggttgctaacttactccttcatgtttttgggtgagagtaagtt 43071766  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 19516624 - 19516676
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||||| ||||||||||||||||||| |||||| || ||||||||||    
T  19516624 gtgggagtagacttgctaacttactccttcatgtttttgtgtgggagtaagtt 19516676  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 35603203 - 35603251
Alignment:
Q  276 tgctaacttactccttcatatttttgggttggagtaagtttgtaaaccc 324  Q
    ||||||||||||||||||| ||||||||| |||||||||| | ||||||    
T  35603203 tgctaacttactccttcatgtttttgggtgggagtaagttagcaaaccc 35603251  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 30925436 - 30925384
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||| | |||||||||||||||| |||||||| ||| ||||||||||    
T  30925436 gtgggagtaggcttgctaacttactccttaatatttttaggtgggagtaagtt 30925384  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 30926002 - 30926054
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||||| ||||||||||||||||||| ||||| | | ||||||||||    
T  30926002 gtgggagtagacttgctaacttactccttcatgtttttagatgggagtaagtt 30926054  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 49605911 - 49605963
Alignment:
Q  263 gtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||| ||||||| | ||||||||||||| ||| ||||||||| ||||||||||    
T  49605911 gtgggagtagactttctaacttactcctccatgtttttgggtgggagtaagtt 49605963  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 43020107 - 43020039
Alignment:
Q  247 ttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||||||||| |||| |||| ||||  | ||||||||||||||||||| ||||| ||| ||||||||||    
T  43020107 ttttagtaaaagacaagtgggagtatgcttgctaacttactccttcatgtttttaggtgggagtaagtt 43020039  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Complemental strand, 37521899 - 37521860
Alignment:
Q  276 tgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  37521899 tgctaacttactccttcatgtttttgggtgggagtaagtt 37521860  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 11313985 - 11314054
Alignment:
Q  246 tttttagtaaatgacaggtggaagtagacgtgctaacttactccttcatatttttgggttggagtaagtt 315  Q
    |||||||||||  | | |||| ||||||| ||||||||||||| ||||||||||| |||  |||||||||    
T  11313985 tttttagtaaaaaataagtgggagtagacttgctaacttactctttcatatttttaggtgagagtaagtt 11314054  T

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