View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4343-Insertion-8 (Length: 303)
Name: NF4343-Insertion-8
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4343-Insertion-8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 303
Target Start/End: Complemental strand, 47366337 - 47366039
Alignment:
| Q |
7 |
atatagttgataaacttcagtcagttttggcaaatagcggctatagaggtggtgctatagcactatagcatagtgaatttgaactaatcgtcaaataaat |
106 |
Q |
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| T |
47366337 |
atatagttgataaacttcagtcagttttggcaaatagcggctatagaggtggtgctatagcactatagcatagtgaatttgaactaatcgtcaaataaat |
47366238 |
T |
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| Q |
107 |
gctattgcagcgccacagcgtaatgaaattctaacaaaccactaatttccgagatttgcgattaacaacactaactgcagtgaaactttgt--ttttgct |
204 |
Q |
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| T |
47366237 |
gctattgcagcgccacagcgtaatgaaattctaacaaaccactaatttccgagatttgcgattaacaacactaactgcagtgaaactttgtttttttgct |
47366138 |
T |
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| Q |
205 |
atgtgttgaagagtaaaaactaatgatctaatgaaagttgttaggcccacccttatgatcttgtctcttgaaccttgcatcttttcatgctcaccacaa |
303 |
Q |
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| T |
47366137 |
atgtattgaaaagtaaaaactaatgatctaatgaaagttgttaggcccacccttatgatcttgtctcttgaaccttgcatcttttcatgctcgccacaa |
47366039 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 9446327 - 9446359
Alignment:
| Q |
38 |
aaatagcggctatagaggtggtgctatagcact |
70 |
Q |
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| T |
9446327 |
aaatagcggctatagtggtggtgctatagcact |
9446359 |
T |
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