View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4343_low_1 (Length: 431)
Name: NF4343_low_1
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4343_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 37 - 412
Target Start/End: Complemental strand, 48604636 - 48604261
Alignment:
| Q |
37 |
gtttcaggtcatagttggagttgttgaggcaggagatgtatcatgtatgtatgtcctctccatatggtataagttaatcttgaaagatagccaacttgat |
136 |
Q |
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| T |
48604636 |
gtttcaggtcatagttggagttgttgaggcaggagatgtatcatgtatgtatgtcctctccatatggtataagttaatcttgaaagatagccaacatgat |
48604537 |
T |
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| Q |
137 |
acattttgagagtgcttcttccagtactccaatccaatataaattcatgttttctttgctgataatagattcatagtaatatatgtcatccaacgctacc |
236 |
Q |
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| T |
48604536 |
acattttgagagtgcttcttccagtactccaatccaatataaattcatgttttctttgctgatcatagattcatagtaatatatgtcatccaacgctacc |
48604437 |
T |
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| Q |
237 |
ggtactttctcgttcgattcttttcatctaataaagggctatgcatgaagtagtgggatgtggtccagtttagaacaaaattatatgatgatgatttgga |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48604436 |
ggtactttctcgttcgattcttttcatctaataaagggctatgcatgaagtagtgggatgtggtccagtttagaacaaaattatatgatgatgatttgga |
48604337 |
T |
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| Q |
337 |
ttgatcactgatagacaccgcattcgaccaatgatacatttttcaatagattaactaattaatgaaaggtcggtcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48604336 |
ttgatcactgatagacaccgcattcgaccaatgatacatttttcaatagattaactaattaatgaaaggtcggtcg |
48604261 |
T |
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