View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4343_low_2 (Length: 407)
Name: NF4343_low_2
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4343_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 33718411 - 33718202
Alignment:
| Q |
1 |
agaggaaaagcacttgcaaacacacaaaacatacattggcaaagtccaaagtaagctaagaggttgaagggagattaaacctgtgtacagtttgaaagat |
100 |
Q |
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| T |
33718411 |
agaggaaaagcacttgcaaacacacaaaacatacattggcaaagtccaaagtaagctaagaggttgaagggagattaaacctgtgtatagtttgaaagat |
33718312 |
T |
|
| Q |
101 |
gttggcaaattcctttgcttaatgatccaccaaatatctgatttattgaggctataaagtcccggatctataatcattggcttccctctcttattgctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718311 |
gttggcaaattcctttgcttaatgatccaccaaatatctgatttattgaggctataaagtcccggatctataatcattggcttccctctcttattgctaa |
33718212 |
T |
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| Q |
201 |
aattggttat |
210 |
Q |
| |
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|||||||||| |
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| T |
33718211 |
aattggttat |
33718202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 33718132 - 33718023
Alignment:
| Q |
280 |
caatattccactcacaatttccaacccaaacgactactatgttgtatgaaattaatatcccttggcacctcagaaaaaacttggatcagatctgaaaatt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718132 |
caatattccactcacaatttccaacccaaacgactactatgttgtatgaaattaatatcccttggcacctcagaaaaaacttggatcagatctgaaaatt |
33718033 |
T |
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| Q |
380 |
caaaaaaggt |
389 |
Q |
| |
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|||||||||| |
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| T |
33718032 |
caaaaaaggt |
33718023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 9537251 - 9537370
Alignment:
| Q |
79 |
acctgtgtacagtttgaaagatgttggcaaattcctttgcttaatgatccaccaaatatctgatttattgaggctataaagtcccggatctataatcatt |
178 |
Q |
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|||||| || ||||| |||| |||||| | | ||||||||||| | | | ||||||||||||||| || ||||||| ||| | |||||||||| ||| |
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| T |
9537251 |
acctgtatatagtttaaaagctgttgggagactcctttgcttagtaacctgccaaatatctgatttcttttggctatatagtgctggatctataaatatt |
9537350 |
T |
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| Q |
179 |
ggcttccctctcttattgct |
198 |
Q |
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|||||||||||||||||||| |
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| T |
9537351 |
ggcttccctctcttattgct |
9537370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 379
Target Start/End: Original strand, 9537906 - 9537997
Alignment:
| Q |
288 |
cactcacaatttccaacccaaacgactactatgttgtatgaaattaatatcccttggcacctcagaaaaaacttggatcagatctgaaaatt |
379 |
Q |
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|||| ||||||||||||||||| |||| |||| || ||||||||||||| | |||| || ||||||| | ||||||||||||||||||| |
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| T |
9537906 |
cacttacaatttccaacccaaatgactgttatgatgaatgaaattaatatgctttggaactccagaaaaggcatggatcagatctgaaaatt |
9537997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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