View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4343_low_3 (Length: 390)

Name: NF4343_low_3
Description: NF4343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4343_low_3
NF4343_low_3
[»] scaffold0037 (4 HSPs)
scaffold0037 (108-371)||(102937-103203)
scaffold0037 (111-371)||(32361-32607)
scaffold0037 (17-82)||(102881-102946)
scaffold0037 (17-82)||(32601-32666)
[»] chr6 (15 HSPs)
chr6 (198-367)||(10426956-10427125)
chr6 (108-166)||(10427124-10427182)
chr6 (17-82)||(10427173-10427238)
chr6 (42-82)||(6299513-6299553)
chr6 (42-82)||(6306323-6306363)
chr6 (35-82)||(19602199-19602246)
chr6 (42-82)||(2140499-2140539)
chr6 (40-76)||(29711261-29711297)
chr6 (48-79)||(1893390-1893421)
chr6 (46-81)||(17422274-17422309)
chr6 (35-82)||(30866162-30866209)
chr6 (48-79)||(33135839-33135870)
chr6 (31-73)||(19315821-19315863)
chr6 (42-82)||(17168895-17168935)
chr6 (34-82)||(31579243-31579291)
[»] chr3 (5 HSPs)
chr3 (46-82)||(40150589-40150625)
chr3 (36-82)||(18180534-18180580)
chr3 (47-81)||(25652050-25652084)
chr3 (46-79)||(9210846-9210879)
chr3 (42-82)||(52369776-52369816)
[»] chr1 (6 HSPs)
chr1 (35-82)||(42325554-42325601)
chr1 (40-82)||(3921666-3921708)
chr1 (47-82)||(11571591-11571626)
chr1 (47-82)||(40747791-40747826)
chr1 (49-82)||(2471231-2471264)
chr1 (42-82)||(40686776-40686816)
[»] chr2 (8 HSPs)
chr2 (40-82)||(18570971-18571013)
chr2 (46-82)||(40681987-40682023)
chr2 (47-82)||(30563415-30563450)
chr2 (40-78)||(2073941-2073979)
chr2 (48-82)||(25544488-25544522)
chr2 (46-82)||(10535777-10535813)
chr2 (49-81)||(27084270-27084302)
chr2 (46-82)||(31026700-31026736)
[»] chr8 (8 HSPs)
chr8 (42-78)||(9936815-9936851)
chr8 (39-82)||(27733845-27733888)
chr8 (42-81)||(34739080-34739119)
chr8 (40-82)||(31586295-31586337)
chr8 (48-82)||(34201064-34201098)
chr8 (49-82)||(12559124-12559157)
chr8 (49-82)||(12606847-12606880)
chr8 (49-82)||(29198497-29198530)
[»] chr7 (8 HSPs)
chr7 (50-82)||(30516375-30516407)
chr7 (46-82)||(38134424-38134460)
chr7 (47-82)||(44172908-44172943)
chr7 (48-78)||(41099763-41099793)
chr7 (53-82)||(35917398-35917427)
chr7 (46-82)||(3520360-3520396)
chr7 (48-80)||(16809864-16809896)
chr7 (44-76)||(29769328-29769360)
[»] chr5 (9 HSPs)
chr5 (46-82)||(11596473-11596509)
chr5 (46-82)||(32630753-32630789)
chr5 (35-82)||(2335612-2335659)
chr5 (46-81)||(28296333-28296368)
chr5 (35-82)||(43208292-43208339)
chr5 (36-82)||(18607115-18607161)
chr5 (48-82)||(25863211-25863245)
chr5 (41-82)||(40097618-40097659)
chr5 (46-82)||(38749581-38749617)
[»] chr4 (11 HSPs)
chr4 (46-82)||(18513259-18513295)
chr4 (47-82)||(5654609-5654644)
chr4 (47-82)||(10546154-10546189)
chr4 (48-82)||(38178621-38178655)
chr4 (48-82)||(40224549-40224583)
chr4 (37-82)||(5176980-5177025)
chr4 (46-78)||(14465316-14465348)
chr4 (42-82)||(19230327-19230367)
chr4 (46-82)||(20119950-20119986)
chr4 (46-82)||(34589724-34589760)
chr4 (47-79)||(43188618-43188650)
[»] scaffold0011 (1 HSPs)
scaffold0011 (48-82)||(240039-240073)
[»] scaffold0571 (1 HSPs)
scaffold0571 (47-79)||(7696-7728)
[»] scaffold0316 (1 HSPs)
scaffold0316 (42-82)||(16137-16177)


Alignment Details
Target: scaffold0037 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 108 - 371
Target Start/End: Original strand, 102937 - 103203
Alignment:
Q  108 ttcaatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcgacctctatttacctgttgggtaannnnnnnn---agttttctgttacaca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||           ||||||||||||||||    
T  102937 ttcaatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcggcctctatttacctgttgggtaatttttttttttagttttctgttacaca 103036  T
Q  205 gggagaatggaatgtaagcattacttgaatgtcgacaattctttcagcaagtgtgagtgtacgggaaatcatcttagaaagattgaagttgaacaagagt 304  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  103037 gggagaatggaaagtaagcattacttgaatgtcgacaatcctttcagcaagtgtgcgtgtaagggaaatcatcttagaaagattgaagttgaacaagagt 103136  T
Q  305 gtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattccaca 371  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  103137 gtaaagttagggtcctgtctcgtttttttcataaagtcgaagagtgtaaagtggagcatattccaca 103203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 111 - 371
Target Start/End: Complemental strand, 32607 - 32361
Alignment:
Q  111 aatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcgacctctatttacctgttgggtaannnnnnnn-agttttctgttacacagggag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||||||    
T  32607 aatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcggcctctatttacctgttgggtaatttttttttagttttctgttacacagggag 32508  T
Q  210 aatggaatgtaagcattacttgaatgtcgacaattctttcagcaagtgtgagtgtacgggaaatcatcttagaaagattgaagttgaacaagagtgtaaa 309  Q
    ||||||| |||||||||||||| ||||||||||| ||||||                |||||||||||||||||||||||||||||||||||||||||||    
T  32507 aatggaaagtaagcattacttgtatgtcgacaatcctttcaa---------------gggaaatcatcttagaaagattgaagttgaacaagagtgtaaa 32423  T
Q  310 gttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattccaca 371  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32422 gttagggtcctgtctcgtttttttcataaagtcgaagagtgtaaagtggagcatattccaca 32361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 102881 - 102946
Alignment:
Q  17 ataaacctatcaagcacccacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  102881 ataaccctatcaagcacccacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 102946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 32666 - 32601
Alignment:
Q  17 ataaacctatcaagcacccacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||||    
T  32666 ataaccctatcaagcacccacatcaacattgataataatttgagaaaatgatgtaatttaatgtaa 32601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 198 - 367
Target Start/End: Complemental strand, 10427125 - 10426956
Alignment:
Q  198 ttacacagggagaatggaatgtaagcattacttgaatgtcgacaattctttcagcaagtgtgagtgtacgggaaatcatcttagaaagattgaagttgaa 297  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  10427125 ttacacagggagaatggaaagtaagcattacttgtatgtcgacaatcctttcagcaagtatgtgtgtaagggaaatcatcttagaaagattgaagttgaa 10427026  T
Q  298 caagagtgtaaagttagggtcctgtctcggttttttcataaagtcgaagagtgtaaagtggagcatattc 367  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  10427025 caagagtgtaaagttagggtcctgtctcgttattttcataaagtcgaagagtgtaaagtggagcatattc 10426956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 10427182 - 10427124
Alignment:
Q  108 ttcaatgtaatttttatgttcgatcagaaatgtcgatgctactgagctcgacctctatt 166  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10427182 ttcaatgtaattgttatgttcgatcagaaatgtcgatgctactgagctcgacctctatt 10427124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 10427238 - 10427173
Alignment:
Q  17 ataaacctatcaagcacccacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  10427238 ataaccctatcaagcacccacaccaacatcgataataacttgacaaaatgatataattcaatgtaa 10427173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 6299513 - 6299553
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6299513 acatggataataatttgagaaaatgatataattcaatgtaa 6299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 6306323 - 6306363
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6306323 acatggataataatttgagaaaatgatataattcaatgtaa 6306363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 19602246 - 19602199
Alignment:
Q  35 cacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||  |||||||||||||||||||||||||||||| |||||    
T  19602246 cacaccaacactgataataatttgagaaaatgatataattcagtgtaa 19602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 2140539 - 2140499
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  2140539 acattgataataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 29711261 - 29711297
Alignment:
Q  40 caacatcgataataatttgagaaaatgatataattca 76  Q
    |||||||||||||||||||||||||||| ||||||||    
T  29711261 caacatcgataataatttgagaaaatgacataattca 29711297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 1893421 - 1893390
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatg 79  Q
    ||||||||||||||||||||||||||||||||    
T  1893421 ataataatttgagaaaatgatataattcaatg 1893390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 17422309 - 17422274
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgta 81  Q
    ||||||||||||||||||||||||||||| ||||||    
T  17422309 cgataataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 30866209 - 30866162
Alignment:
Q  35 cacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||| || ||||||||||||||||| | ||||||||||||||    
T  30866209 cacaccaacaccgctaataatttgagaaaatcacataattcaatgtaa 30866162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 33135839 - 33135870
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatg 79  Q
    ||||||||||||||||||||||||||||||||    
T  33135839 ataataatttgagaaaatgatataattcaatg 33135870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 19315863 - 19315821
Alignment:
Q  31 cacccacaccaacatcgataataatttgagaaaatgatataat 73  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||    
T  19315863 caccgacaccaacaccgacaataatttgagaaaatgatataat 19315821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 17168895 - 17168935
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||| ||||||| ||||||||||||||    
T  17168895 acattgataataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 31579291 - 31579243
Alignment:
Q  34 ccacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||| || ||||||||||||||||| | |||||||| |||||    
T  31579291 ccacaccaacaccgttaataatttgagaaaatcacataattcagtgtaa 31579243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 40150625 - 40150589
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||||||||||||||||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaa 40150589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 18180534 - 18180580
Alignment:
Q  36 acaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| |||||| |||||||||||||||||||| |||||| |||||||    
T  18180534 acactaacatcaataataatttgagaaaatgaaataattaaatgtaa 18180580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 25652084 - 25652050
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgta 81  Q
    |||||||||||||||||||||||||||||| ||||    
T  25652084 gataataatttgagaaaatgatataattcagtgta 25652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 9210879 - 9210846
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatg 79  Q
    |||||||||||||||||||||| |||||||||||    
T  9210879 cgataataatttgagaaaatgacataattcaatg 9210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 52369776 - 52369816
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||||| | ||||||||||||||    
T  52369776 acatggataataatttgagaaaattacataattcaatgtaa 52369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 42325554 - 42325601
Alignment:
Q  35 cacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||| |||||||||||||||||||||| |||||||| |||||    
T  42325554 cacaccaacaccgataataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 3921666 - 3921708
Alignment:
Q  40 caacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  3921666 caacatcaataataatttgagaaaatgacataattcaatgtaa 3921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 11571591 - 11571626
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaa 11571626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 40747826 - 40747791
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaa 40747791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 2471264 - 2471231
Alignment:
Q  49 taataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||| ||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaa 2471231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 40686816 - 40686776
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||| | ||||| ||||||||||||||||||||||    
T  40686816 acatcgataaaattttgataaaatgatataattcaatgtaa 40686776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 18570971 - 18571013
Alignment:
Q  40 caacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  18570971 caacaccgataataatttgagaaaatgacataattcaatgtaa 18571013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 40681987 - 40682023
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||| ||||||||||||||    
T  40681987 cgataataatttgagaaaatgacataattcaatgtaa 40682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 30563415 - 30563450
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30563415 gataataatttgagaaaatgacataattcaatgtaa 30563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 2073941 - 2073979
Alignment:
Q  40 caacatcgataataatttgagaaaatgatataattcaat 78  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  2073941 caacatcgataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 25544488 - 25544522
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||||||||||| |||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaa 25544522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 10535813 - 10535777
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||| |||||||| |||||    
T  10535813 cgataataatttgagaaaatgacataattcagtgtaa 10535777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 27084270 - 27084302
Alignment:
Q  49 taataatttgagaaaatgatataattcaatgta 81  Q
    ||||||||||||||||| |||||||||||||||    
T  27084270 taataatttgagaaaatcatataattcaatgta 27084302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 31026700 - 31026736
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  31026700 cgataataatttaagaaaatgacataattcaatgtaa 31026736  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 9936815 - 9936851
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaat 78  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9936815 acatcgataataatttaagaaaatgatataattcaat 9936851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 27733845 - 27733888
Alignment:
Q  39 ccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||| |||||| | ||||||||||||||||||||||||||||    
T  27733845 ccaacaccgataaaattttgagaaaatgatataattcaatgtaa 27733888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 34739119 - 34739080
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgta 81  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  34739119 acatcgataataatatgagaaaatgacataattcaatgta 34739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 31586337 - 31586295
Alignment:
Q  40 caacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||| |||||||||||||||||||||||||||  |||||||    
T  31586337 caacattgataataatttgagaaaatgatataatataatgtaa 31586295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 34201098 - 34201064
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||| ||||||||||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaa 34201064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 12559157 - 12559124
Alignment:
Q  49 taataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||||||||| |||||    
T  12559157 taataatttgagaaaatgatataattcagtgtaa 12559124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 12606880 - 12606847
Alignment:
Q  49 taataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||| ||||||||||||||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaa 12606847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 29198530 - 29198497
Alignment:
Q  49 taataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||| ||||||||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaa 29198497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 30516407 - 30516375
Alignment:
Q  50 aataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||||||||||||||    
T  30516407 aataatttgagaaaatgatataattcaatgtaa 30516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 38134460 - 38134424
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38134460 cgataataatttgagaaaatgacataattcaatgtaa 38134424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 44172943 - 44172908
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaa 44172908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 41099793 - 41099763
Alignment:
Q  48 ataataatttgagaaaatgatataattcaat 78  Q
    |||||||||||||||||||||||||||||||    
T  41099793 ataataatttgagaaaatgatataattcaat 41099763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 82
Target Start/End: Complemental strand, 35917427 - 35917398
Alignment:
Q  53 aatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||||||||||||    
T  35917427 aatttgagaaaatgatataattcaatgtaa 35917398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 3520396 - 3520360
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  3520396 cgataatcatttgagaaaatcatataattcaatgtaa 3520360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 16809864 - 16809896
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgt 80  Q
    |||||||||||||||||||||| ||||||||||    
T  16809864 ataataatttgagaaaatgataaaattcaatgt 16809896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 29769328 - 29769360
Alignment:
Q  44 atcgataataatttgagaaaatgatataattca 76  Q
    ||||||||||||||||||||||||| |||||||    
T  29769328 atcgataataatttgagaaaatgatgtaattca 29769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 11596509 - 11596473
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||| ||||||||||||||    
T  11596509 cgataataatttgagaaaatgacataattcaatgtaa 11596473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 32630789 - 32630753
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32630789 cgataataatttgagaaaattatataattcaatgtaa 32630753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 2335612 - 2335659
Alignment:
Q  35 cacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||| |||| |||||||||||||||||||||| ||| |||||||||    
T  2335612 cacaccgacatagataataatttgagaaaatgatgtaagtcaatgtaa 2335659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 28296333 - 28296368
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgta 81  Q
    |||||||||||||||||||||| |||||||||||||    
T  28296333 cgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 43208339 - 43208292
Alignment:
Q  35 cacaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||| ||||| |||||||||||||||| ||||||||||||||    
T  43208339 cacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaa 43208292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 18607161 - 18607115
Alignment:
Q  36 acaccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||| |||| ||||||||||||||||||| | ||||||||||||||    
T  18607161 acaccgacatggataataatttgagaaaataacataattcaatgtaa 18607115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 25863211 - 25863245
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||||||||||| |||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaa 25863245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 40097659 - 40097618
Alignment:
Q  41 aacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||| |||||| ||||||||||||||||||||||||||    
T  40097659 aacagcgacaataatctgagaaaatgatataattcaatgtaa 40097618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 38749617 - 38749581
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  38749617 cgataataatttgaaaaaatgacataattcaatgtaa 38749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 18513295 - 18513259
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||| ||||||||||||||    
T  18513295 cgataataatttgagaaaatgacataattcaatgtaa 18513259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 5654644 - 5654609
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaa 5654609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 10546154 - 10546189
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaa 10546189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 38178655 - 38178621
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||| ||||||||||||||||||||||||||||    
T  38178655 ataatactttgagaaaatgatataattcaatgtaa 38178621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 40224583 - 40224549
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||||||||||||||||||| |||||||||    
T  40224583 ataataatttgagaaaatgatataagtcaatgtaa 40224549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 5176980 - 5177025
Alignment:
Q  37 caccaacatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    ||||||||| ||||||| ||||||||||| | ||||||||||||||    
T  5176980 caccaacattgataatattttgagaaaataacataattcaatgtaa 5177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 14465348 - 14465316
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaat 78  Q
    |||||||||||||||||||||| ||||||||||    
T  14465348 cgataataatttgagaaaatgacataattcaat 14465316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 19230367 - 19230327
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||| ||||||||||||||||||| | ||||||||||||||    
T  19230367 acatagataataatttgagaaaataacataattcaatgtaa 19230327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 20119950 - 20119986
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||||||| |||||| |||||||    
T  20119950 cgataataatttgagaaaatgaaataatttaatgtaa 20119986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 34589760 - 34589724
Alignment:
Q  46 cgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  34589760 cgataacaatttgagaaaatgacataattcaatgtaa 34589724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 43188618 - 43188650
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatg 79  Q
    ||||||||||||||||||||| |||||||||||    
T  43188618 gataataatttgagaaaatgacataattcaatg 43188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 240073 - 240039
Alignment:
Q  48 ataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||||| ||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaa 240039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 7696 - 7728
Alignment:
Q  47 gataataatttgagaaaatgatataattcaatg 79  Q
    ||||||||||||||||||||| |||||||||||    
T  7696 gataataatttgagaaaatgacataattcaatg 7728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 16137 - 16177
Alignment:
Q  42 acatcgataataatttgagaaaatgatataattcaatgtaa 82  Q
    |||||||||||||||| ||||||||| ||||||||| ||||    
T  16137 acatcgataataatttaagaaaatgaaataattcaacgtaa 16177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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