View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4344-Insertion-1 (Length: 1134)

Name: NF4344-Insertion-1
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4344-Insertion-1
NF4344-Insertion-1
[»] chr1 (4 HSPs)
chr1 (8-983)||(2151479-2152457)
chr1 (8-245)||(2163753-2163990)
chr1 (338-413)||(2164250-2164325)
chr1 (890-964)||(2164587-2164664)
[»] chr3 (4 HSPs)
chr3 (33-240)||(8537245-8537451)
chr3 (20-210)||(49770236-49770426)
chr3 (703-752)||(44284164-44284213)
chr3 (717-754)||(48528507-48528544)
[»] chr7 (1 HSPs)
chr7 (10-138)||(4302256-4302384)
[»] chr4 (3 HSPs)
chr4 (23-210)||(2900569-2900756)
chr4 (665-746)||(485958-486039)
chr4 (685-747)||(7749193-7749255)
[»] chr6 (2 HSPs)
chr6 (698-752)||(33027553-33027607)
chr6 (698-752)||(31668791-31668845)
[»] chr2 (1 HSPs)
chr2 (727-791)||(29503148-29503212)
[»] chr5 (3 HSPs)
chr5 (717-776)||(10798486-10798545)
chr5 (664-746)||(26516174-26516256)
chr5 (698-747)||(40534104-40534153)
[»] chr8 (1 HSPs)
chr8 (690-776)||(26716518-26716604)


Alignment Details
Target: chr1 (Bit Score: 903; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 8 - 983
Target Start/End: Original strand, 2151479 - 2152457
Alignment:
Q  8 agtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcgtaagtttctggtgctggttgtagaagag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2151479 agtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagag 2151578  T
Q  108 aaacaagtgcagttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2151579 aaacaagtgcagttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccat 2151678  T
Q  208 gaacaacacctttataggtccaaccagcatctcaccttcacaaaatattattaatcataaacctcattatttaagtttcagataaaggttttcagtttct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2151679 gaacaacacctttataggtccaaccagcatctcaccttcacaaaatattattaatcataaacctcattatttaagtttcagataaaggttttcagtttct 2151778  T
Q  308 ttgtcatgtttttccttgtcaaatatattttacctgtagtgagtcgctttttctcgcctcctgagatacctcttatcatttggtctcctaccattgtgtc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2151779 ttgtcatgtttttccttgtcaaatatattttacctgtagtgagtcgctttttctcgcctcctgagatacctcttatcatttggtctcctaccattgtgtc 2151878  T
Q  408 ggcacaaacatcaagtcccgaaatctgcaacatatcacaaaggagtaattaaaacc-tttcttgtttcacaagttaactatatttggtgaatctggacta 506  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2151879 ggcacaaacatcaagtcccaaaatctgcaacatatcacaaaggagtaattaaaaccttttcttgtttcacaagttaactatatttggtgaatctggacta 2151978  T
Q  507 ttaccttaagagtgtagtcaatgaccacactgttctggtggccttctattgctgcttcctgcatattttgagtgaattactagctcataaattaagaagc 606  Q
      ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2151979 --accttaagaatgtagtcaatgaccacactgttctggtggccttctattgctgcttcctgcatattttgagtgaattactagctcataaatcaagaagc 2152076  T
Q  607 tttatcgcagttcaacatgttcaccatttcaaacattaggattcaaaacatagtctaggccctgtttagataaactgtttaactaagcacctatagcata 706  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152077 tttattgcagtttaacatgttcaccatttcaaacattaggattcaaaacatagtctaggccctgtttagataaactgtttaactaagcacctatagcata 2152176  T
Q  707 agcgattacaatataagtacttatgtatatgctatttctatgacaagataatgtaaagtgaaactattttaatataagttataaggtggtttcataggct 806  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152177 agcgattacaatataagtgcttatgtataagctatttctatgacaagataatgtaaagtgaaactattttaatataagttataaggtggtttcataggct 2152276  T
Q  807 ttttccataagttatcccaaacagtttcacaaatactatgtcggtaataagatcagataagtcaatccaaaaagattatttaattcttaccttcatatag 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152277 ttttccataagttatcccaaacagtttcacaaatactatgtcggtaataagatcagataagtcaatccaaaaagattatttaattcttaccttcatatag 2152376  T
Q  907 gcattaatatcaggatctggttc-atctttgattc--tctcttttctcagtagttcagtc-acatttctgcgtagtgatga 983  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  2152377 gcattaatatcaggatctggttcaatctttgattccttctcttttctcagtagttcagtcaacatttctgcgtagtgatga 2152457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 2163753 - 2163990
Alignment:
Q  8 agtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcgtaagtttctggtgctggttgtagaagag 107  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  2163753 agtacattttctcttggtccttgatacacaatttgtccatctgtgagcagtattatatcatcaaataattcataagtttctggtgctggttgtagcagag 2163852  T
Q  108 aaacaagtgcagttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccat 207  Q
    | |||||||| ||||||||||||||||| || |||||  |||||||| ||||||| ||||||||||||||||||||||||||| ||||||| || |||||    
T  2163853 acacaagtgcggttccatttagaatatggattgattgtctgattgagctgattatttgaaaagttgttgaactgtccaaaccagttgatatttcgtccat 2163952  T
Q  208 gaacaacacctttataggtccaaccagcatctcacctt 245  Q
    |||||| ||| |||| ||||||||||||||||| ||||    
T  2163953 gaacaatacccttattggtccaaccagcatctcccctt 2163990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 2164250 - 2164325
Alignment:
Q  338 tacctgtagtgagtcgctttttctcgcctcctgagatacctcttatcatttggtctcctaccattgtgtcggcaca 413  Q
    ||||||| |||| || ||||||||  |||||||| |||||||||||||||   |||||||||||  ||||||||||    
T  2164250 tacctgttgtgactctctttttctgccctcctgaaatacctcttatcattccatctcctaccataatgtcggcaca 2164325  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 890 - 964
Target Start/End: Original strand, 2164587 - 2164664
Alignment:
Q  890 ttcttaccttcatataggcattaatatcaggatctgg-ttcatctttgattc--tctcttttctcagtagttcagtca 964  Q
    |||| |||||||||||||||| || |||||||||||| || ||||||| |||  ||||| |||| |||||||||||||    
T  2164587 ttctcaccttcatataggcatcaacatcaggatctggtttaatctttgcttccttctctcttcttagtagttcagtca 2164664  T

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Target: chr3 (Bit Score: 96; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 8537245 - 8537451
Alignment:
Q  33 acacaatttgtccatcagtgagaagtattatatcatcaaatagttcgtaagtttctggtgctggttgtagaagagaaacaagtgcagttccatttagaat 132  Q
    |||||||||||||||| ||||| | ||| ||||||| ||||| ||| ||||||||||||||||||||| | ||||| | | ||||| |||||||||||||    
T  8537245 acacaatttgtccatctgtgagcaatatgatatcattaaataattcataagtttctggtgctggttgtcgcagagaca-atgtgcaattccatttagaat 8537343  T
Q  133 atgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaacaacacctttataggtccaacc 232  Q
    ||| || |||| | |||||||| | ||||| ||||||||| || |||||||||| ||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  8537344 atggattgatttcctgattgagcttattatttgaaaagtttttaaactgtccaagccagttgatatttcatccatgaacaagacccttataggtccaacc 8537443  T
Q  233 agcatctc 240  Q
    ||||||||    
T  8537444 agcatctc 8537451  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 49770426 - 49770236
Alignment:
Q  20 cttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcgtaagtttctggtgctggttgtagaagagaaacaagtgcag 119  Q
    ||||| |||||||||||||||||||| || | ||| || ||||| || || ||||  ||||||||||| |||| ||| ||||||||||| | ||| || |    
T  49770426 cttggaccttgatacacaatttgtccgtctgagaggagaattatgtcgtcgaataaatcgtaagtttcaggtgttggctgtagaagagagataagagctg 49770327  T
Q  120 ttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaa 210  Q
    ||||||| ||||| || || |||||| | | ||| || || || ||||| ||||||||||||||||||||| | ||||| || ||||||||    
T  49770326 ttccattcagaatgtggatggattgccttagtgaattaatcatttgaaatgttgttgaactgtccaaaccagtcgatatttcgtccatgaa 49770236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 752
Target Start/End: Complemental strand, 44284213 - 44284164
Alignment:
Q  703 cataagcgattacaatataagtacttatgtatatgctatttctatgacaa 752  Q
    ||||||||||||  ||||||||||| ||||||| ||||||||||| ||||    
T  44284213 cataagcgattatcatataagtactaatgtataagctatttctataacaa 44284164  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 754
Target Start/End: Original strand, 48528507 - 48528544
Alignment:
Q  717 atataagtacttatgtatatgctatttctatgacaaga 754  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  48528507 atataagtacttatgtataagctatttctataacaaga 48528544  T

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Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 4302384 - 4302256
Alignment:
Q  10 tacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcgtaagtttctggtgctggttgtagaagagaa 109  Q
    ||||| || |||||| ||||||||||||||||||||||| || || | ||| |||||||| |||| ||| ||||||||| ||||||| ||||| ||||      
T  4302384 tacattttttcttgggccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtttctagtgctggctgtagcagagtt 4302285  T
Q  110 acaagtgcagttccatttagaatatgaat 138  Q
    |||||||||||||||||||| ||||||||    
T  4302284 acaagtgcagttccatttaggatatgaat 4302256  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 2900569 - 2900756
Alignment:
Q  23 ggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcgtaagtttctggtgctggttgtagaagagaaacaagtgcagttc 122  Q
    ||||||||||| |||||||| ||||| |  | ||| || || |||||||| ||||| ||||| |||||||||||||| || | ||| | || ||||||||    
T  2900569 ggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttc 2900668  T
Q  123 catttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaa 210  Q
    |||| |||||||||| | ||||| | |  || || |  || || |||||||| ||||||||||| ||| | ||||| |||||||||||    
T  2900669 cattaagaatatgaacatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaa 2900756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 746
Target Start/End: Original strand, 485958 - 486039
Alignment:
Q  665 gccctgtttagataaactgtttaactaagcacctatagcataagcgattacaatataagtacttatgtatatgctatttcta 746  Q
    ||||||||| ||| ||||  |||| ||||| | ||||||||||||| |||  ||| |||| |||||||||||||||||||||    
T  485958 gccctgtttggatgaactacttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttcta 486039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 685 - 747
Target Start/End: Complemental strand, 7749255 - 7749193
Alignment:
Q  685 ttaactaagcacctatagcataagcgattacaatataagtacttatgtatatgctatttctat 747  Q
    |||||||||| | ||||||||||| | |||| ||||||||  ||||||||| |||||||||||    
T  7749255 ttaactaagctcttatagcataagtgtttaccatataagtgtttatgtatacgctatttctat 7749193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 698 - 752
Target Start/End: Original strand, 33027553 - 33027607
Alignment:
Q  698 tatagcataagcgattacaatataagtacttatgtatatgctatttctatgacaa 752  Q
    ||||||||||||| |||| |||||||  |||||||||||||||||||||| ||||    
T  33027553 tatagcataagcgcttaccatataagctcttatgtatatgctatttctataacaa 33027607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 698 - 752
Target Start/End: Complemental strand, 31668845 - 31668791
Alignment:
Q  698 tatagcataagcgattacaatataagtacttatgtatatgctatttctatgacaa 752  Q
    |||||||||||| ||||  |||||||| |||||||||| ||||||||||| ||||    
T  31668845 tatagcataagcaattatcatataagtgcttatgtataagctatttctataacaa 31668791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 727 - 791
Target Start/End: Complemental strand, 29503212 - 29503148
Alignment:
Q  727 ttatgtatatgctatttctatgacaagataatgtaaagtgaaactattttaatataagttataag 791  Q
    ||||||||||| ||||||||| |||||||||  |||||| |||||||||| | | ||||||||||    
T  29503212 ttatgtatatgatatttctataacaagataaaataaagtcaaactattttcaaagaagttataag 29503148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 717 - 776
Target Start/End: Complemental strand, 10798545 - 10798486
Alignment:
Q  717 atataagtacttatgtatatgctatttctatgacaagataatgtaaagtgaaactatttt 776  Q
    |||||||| |||||||||| ||||||||||||||||||| |  | |||| ||||||||||    
T  10798545 atataagtgcttatgtataagctatttctatgacaagattaaatcaagttaaactatttt 10798486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 664 - 746
Target Start/End: Original strand, 26516174 - 26516256
Alignment:
Q  664 ggccctgtttagataaactgtttaactaagcacctatagcataagcgattacaatataagtacttatgtatatgctatttcta 746  Q
    ||||| |||| |||||||   |||| ||||| | ||||||||||||| |||  |||||||| |||||||||| ||||||||||    
T  26516174 ggcccagtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttcta 26516256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 698 - 747
Target Start/End: Original strand, 40534104 - 40534153
Alignment:
Q  698 tatagcataagcgattacaatataagtacttatgtatatgctatttctat 747  Q
    ||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  40534104 tatagcataagcgcttatcatataaggacttatgtataagctatttctat 40534153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 690 - 776
Target Start/End: Complemental strand, 26716604 - 26716518
Alignment:
Q  690 taagcacctatagcataagcgattacaatataagtacttatgtatatgctatttctatgacaagataatgtaaagtgaaactatttt 776  Q
    |||||||||||||||||| |  |||  |||||||| |||||||||| |||| |||||| ||||||| |  |||||| ||| ||||||    
T  26716604 taagcacctatagcataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtcaaattatttt 26716518  T

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