View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4344-Insertion-10 (Length: 398)
Name: NF4344-Insertion-10
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 38783337 - 38783720
Alignment:
| Q |
7 |
atgaccctttcaacagtgatgaaaaatgtgacctcattaattttccaagtgatacaatatacatcttaagaggatattctttttcatgatcatgttggtg |
106 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38783337 |
atgaccctttcaacaatgttgaaaaatgtgacctcattaattttccaagtgatacaatatacatcttaagaggatattctttttcatgatcatgttggtg |
38783436 |
T |
|
| Q |
107 |
tgtgttgtggaaaaaggatttaaggattgtattgttgatatgaggactcaagtgaggacttttcatccttatcatggtgatgtgttcttacagcgtcctc |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38783437 |
tgtgttgtggaaaaaggatgtaaggattgtattgttgatatgaggactcaagtgagaacttttcattcttatcatggtgatgtgttcttacagcgtcctc |
38783536 |
T |
|
| Q |
207 |
atagagcttttgttagcaacttgaagagtaacaagattgatgggattggttacgggattcatgtgtttcaatcattgtcgatgatttcactggacctttc |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38783537 |
atagaacttttgttagcaacttgaagagtaacaagattgatgggattggttacgggattcatgtgtttcaatcattgtcgatgatttcacttgacctttc |
38783636 |
T |
|
| Q |
307 |
cttttggccacctacaatcccctccaatatccataacatagcatagcgtaggttatgcagaatt-gtttgcactttgcagaatttttgt |
394 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
38783637 |
cttttggccacctacaatcccatccaatatc-----catagcatagcataggttatgcagaattggtttgcactttgctgaatttttgt |
38783720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 297
Target Start/End: Original strand, 51274613 - 51274776
Alignment:
| Q |
137 |
attgttgatatgaggactcaagtgaggacttttcatccttatcatggtgatgt---gttcttacagcgtcctcatagagcttttgttagcaacttgaaga |
233 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||||||||| |||||||||| ||||||||| ||| |||||||| ||||||| | |||||||||| |
|
|
| T |
51274613 |
attgttgatatggggactcaagtgagagctattcatccttatgatggtgatgttgtgttcttacaacgtgctcatagaatttttgttggaaacttgaaga |
51274712 |
T |
|
| Q |
234 |
gtaacaagattgatgggattggttacgggattcatgtgtttcaatcattgtcgatgatttcact |
297 |
Q |
| |
|
|||| ||||||| || ||||||| |||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
51274713 |
ctaacgagattgagggtgttggttatgggattcatgggtttcaatcgttgcaaatgatttcact |
51274776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 51274347 - 51274399
Alignment:
| Q |
7 |
atgaccctttcaacagtgatgaaaaatgtgacctcattaattttccaagtgat |
59 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
51274347 |
atgaccctttcaacaatgatgaaaaatgtgaaatcattaattttcctagtgat |
51274399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 5051096 - 5051043
Alignment:
| Q |
7 |
atgaccctttcaacagtgatgaaaaatgtgacctcattaattttccaagtgata |
60 |
Q |
| |
|
||||||||||||||| ||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
5051096 |
atgaccctttcaacaatgatgaaaattgagacatcattaattttccaagtgata |
5051043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University