View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4344-Insertion-11 (Length: 372)

Name: NF4344-Insertion-11
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4344-Insertion-11
NF4344-Insertion-11
[»] chr4 (1 HSPs)
chr4 (10-372)||(21641211-21641572)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 21641211 - 21641572
Alignment:
Q  10 aatcacaatataataatgaaattattggttaaggcttaacttatagtttgggtaaaaaatatgagttatgaagtgccaaaaacgcagcataacctttttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21641211 aatcacaatataataatgaaattattggttaaggcttaacttatagtttgggtaaaaaatatgagttatgaagtgccaaaaacgcagcataacctttttc 21641310  T
Q  110 tatggcatcaaatttggcttttaatatggtatcttatgggtccaatgggaaaatatatgtgaaggtaacgcgtttagaacatgtgacatacattataa-t 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  21641311 tatggcatcaaatttggcttttaatatggtatcttatgggtccaatgggaaaatatatgtgaaggtaacgcgtttagaacatgtgacatacattataatt 21641410  T
Q  209 ttcgtgcctacttttccacttgnnnnnnnnnnnnnnnnnntgggcacacaaaccgttgctcttcaaatttcaagataccatcctcttctttagttttcta 308  Q
    ||||||||||||||||||||||                  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21641411 ttcgtgcctacttttccacttg--tatatatataatatattgggcacacaaaccgttactcttcaaatttcaagataccatcctcttctttagttttcta 21641508  T
Q  309 tattcatcttctagtggatttcaattacaatctcgaagattagtgattgaaaaatttggttaga 372  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21641509 tattcatcttctagtggatttcaattacaatctcaaagattagtgattgaaaaatttggttaga 21641572  T

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