View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4344-Insertion-13 (Length: 290)
Name: NF4344-Insertion-13
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-13 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 11170169 - 11169884
Alignment:
| Q |
5 |
acattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaataggg |
104 |
Q |
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| T |
11170169 |
acattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgggcgtaataattcctaggaataccacgattcctaccaataggg |
11170070 |
T |
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| Q |
105 |
aaaagtcattcaccacagctgaagacaacctaaaagttatttcgattcatgtttatgagggtgagaggcgaataactaaggacaacaacttgctaggagc |
204 |
Q |
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| T |
11170069 |
aaaagtcattcaccacagctgaagacaacctaaaagttatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagc |
11169970 |
T |
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| Q |
205 |
ttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcaccttagacg |
290 |
Q |
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| T |
11169969 |
ttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcatcttagacg |
11169884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 11208991 - 11208706
Alignment:
| Q |
5 |
acattgagggatgtcaatcctttgtcccttggaattaatatgaaaggggacctcatgagcgtaataattcctaggaataccacgattcctaccaataggg |
104 |
Q |
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| T |
11208991 |
acattgagggaagtcaatcctttgtcccttggaattaatatcaaagggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatatgg |
11208892 |
T |
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| Q |
105 |
aaaagtcattcaccacagctgaagacaacctaaa-agttatttcgattcatgtttatgagggtgagaggcgaataactaaggacaacaacttgctaggag |
203 |
Q |
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| T |
11208891 |
aagatgtatacaccaccagtgaacccaaccaaaatagtt-tatcaatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgctaggat |
11208793 |
T |
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| Q |
204 |
cttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaacttccaaattaacgatgatggcaccttagacg |
290 |
Q |
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| T |
11208792 |
cttttgagtttgaaattcctccatgtccaaaaggtgatcaaaaattcgtggtcaacttccaaattaacgatgatggcatcttagacg |
11208706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 11275402 - 11275272
Alignment:
| Q |
156 |
tttatgagggtgagaggcgaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggt |
255 |
Q |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggt |
11275303 |
T |
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| Q |
256 |
caacttccaaattaacgatgatggcacctta |
286 |
Q |
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| T |
11275302 |
caacttccaaattgacaatgatggcatctta |
11275272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 11196189 - 11196117
Alignment:
| Q |
153 |
atgtttatgagggtgagaggcgaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctcc |
225 |
Q |
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| T |
11196189 |
atgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
11196117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 11155746 - 11155697
Alignment:
| Q |
149 |
attcatgtttatgagggtgagaggcgaataactaaggacaacaacttgct |
198 |
Q |
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| T |
11155746 |
attcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgct |
11155697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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