View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4344-Insertion-14 (Length: 288)
Name: NF4344-Insertion-14
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-14 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 19326394 - 19326674
Alignment:
| Q |
8 |
cattcgtcatcaatcagaaaataccctacctttttccgatgagtgtcaaaacgacaaccaccacaagagattccgttgtcgttccaccttcaacgtcgac |
107 |
Q |
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| T |
19326394 |
cattcatcatcaatcagaaaataccctacctttttccgatgagtgtcaaaacgacaaccaccacaagagattccgttgtcgttccaccttcaacgtcgac |
19326493 |
T |
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| Q |
108 |
gacagaagtaatcgacgttgaaacttttcaattctcttcacccatcgccaccactgcctccgacgtcatcaacctctccgatatcgaagaggacgacgat |
207 |
Q |
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| T |
19326494 |
gacagaagtaatcgacgttgaaacttttcaattctcttcacccatcgccaccactacctccgacgtcatcaacctctccgatatcgaagaggacgacgat |
19326593 |
T |
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| Q |
208 |
gatgacgtcaaaattctgaatttcgtaccgaaaaacacctctttcggaaaacggagaagagtcaaactcgaaaaaggtgaa |
288 |
Q |
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| T |
19326594 |
gatgacgtcaaaattctgaatttcgttccgaaaaacacctctttcggaaaacggagaagagtcaaactcgaaaaaggtgaa |
19326674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 257
Target Start/End: Complemental strand, 25365260 - 25365127
Alignment:
| Q |
124 |
gttgaaacttttcaattctcttcacccatcgccaccactgcctccgacgtcatcaacctctccgatatcgaagaggacgacgatgatgacgtcaaaattc |
223 |
Q |
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| T |
25365260 |
gttgaaacttttcaattctctacccccatcgccaccaccacctccgtcgtcatcaacctctccaatatcgaatacgatgacgatgatgacgtcagaattc |
25365161 |
T |
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| Q |
224 |
tgaatttcgtaccgaaaaacacctctttcggaaa |
257 |
Q |
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| T |
25365160 |
tcaatttcgttcccaaaaacacctctttcagaaa |
25365127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 6450 - 6588
Alignment:
| Q |
116 |
taatcgacgttgaaacttttcaattctcttcacccatcgccaccactgcctccgacgtcatcaacctctccgatatcgaagaggacgacgatgatgacgt |
215 |
Q |
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| T |
6450 |
taatcgacgttgaaacttttcaattctcctaccccatcgccaccaccacctccgttgtcatcaacctctctgatatc------gattacgacgatgacgt |
6543 |
T |
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| Q |
216 |
caaaattctgaatttcgtaccgaaaaacacctctttcggaaaacg |
260 |
Q |
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| T |
6544 |
cagaattctgaattttgttcccaaaaacacctctttcggaaaacg |
6588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 260
Target Start/End: Original strand, 17204 - 17342
Alignment:
| Q |
116 |
taatcgacgttgaaacttttcaattctcttcacccatcgccaccactgcctccgacgtcatcaacctctccgatatcgaagaggacgacgatgatgacgt |
215 |
Q |
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| T |
17204 |
taatcgacgttgaaacttttcaattctcctaccccatcgccaccaccaactccgttgtcatcaacctctctgatatcgattacgacaac------gacgt |
17297 |
T |
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| Q |
216 |
caaaattctgaatttcgtaccgaaaaacacctctttcggaaaacg |
260 |
Q |
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| T |
17298 |
cagaattctgaattttgttcccaaaaacacctctttcgaaaaacg |
17342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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