View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4344-Insertion-3 (Length: 990)
Name: NF4344-Insertion-3
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 661
Target Start/End: Complemental strand, 44721987 - 44721338
Alignment:
| Q |
8 |
ttcttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaacaagtggatacttacaacagctagtttacgttcaaatttt |
107 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721987 |
ttcttcccctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaacaagtggatacttacaacagctagtttacgttcaaatttt |
44721888 |
T |
|
| Q |
108 |
tcataacccgctatttgatgattgatatttagtttttaaattaggattgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcga |
207 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721887 |
tcataacccgctgtttgatgattgatatgtagtttttaaattaggattgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgc |
44721788 |
T |
|
| Q |
208 |
ttgaagttcgcaacattactggtctgtaagcttcagttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaagttaattacttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721787 |
ttgaagttcgcaacattactggtctgtaagcttcagttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaagttaattacttc |
44721688 |
T |
|
| Q |
308 |
ctggctgcattcatttattcaataaagggtggcgttaaaactgaagggtcatattatataccctattccaaattaggcttgccaacttctagtgcaagct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44721687 |
ctggctgcattcatttattcaataaagggtggcgttaaaactgaagggtcatattatataccctattccaaattacgcttgccaacttctagtgcaagct |
44721588 |
T |
|
| Q |
408 |
aactccttttgtacatttaatcatcttcttctcactccataactgactattaacaatgagaatcattatattcacttttcacagtggacatagagttgtc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721587 |
aactccttttgtacatttaatcatcttcttctcactccataactgactattaacaatgagaatcattatattcacttttcacagtggacatagagttgtc |
44721488 |
T |
|
| Q |
508 |
acaaagctatttttcaaagaccaaggacagtcattggtttctgaataaataaatatctacctcgaaggataaagctttcctatgaataacttattttttc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721487 |
acaaagctatttttcaaagaccaaggacagtcattggtttctgaata----aatatctacctcgaaggataaagctttcctatgaataacttattttttc |
44721392 |
T |
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| Q |
608 |
aagagaggcagatgatgctttggtgcaggcttatgataccaaagtcagaatcac |
661 |
Q |
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| T |
44721391 |
aagagagccagatgatgctttggtgcaggcttatgataccaaagtcagaatcac |
44721338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 660 - 955
Target Start/End: Complemental strand, 44720613 - 44720317
Alignment:
| Q |
660 |
acaatggaaggggcagaaccataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatat |
759 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720613 |
acaatggaagaggcagaaccataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatat |
44720514 |
T |
|
| Q |
760 |
ttcccgtcacattaaaaactcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaat |
859 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720513 |
ttcccgtcacattaaaaactcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaat |
44720414 |
T |
|
| Q |
860 |
aatgataaattagatctaccatttcaaat-agatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtt |
955 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44720413 |
aatgataaattagacctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagttgatattagtt |
44720317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 43951777 - 43951731
Alignment:
| Q |
62 |
ataaaacaagtggatacttacaacagctagtttacgttcaaattttt |
108 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||| ||||| |
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| T |
43951777 |
ataaaacaagtagatacttacaacagctggtttacgttcaatttttt |
43951731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 43951867 - 43951808
Alignment:
| Q |
10 |
cttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaaca |
69 |
Q |
| |
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|||| |||| |||| || || ||||||||||||||||| |||||| |||||||||||||| |
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| T |
43951867 |
cttccccttgaaaggaaactgtttatgatttctattccaacaagtgctctcaataaaaca |
43951808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 479 - 558
Target Start/End: Complemental strand, 38673084 - 38673005
Alignment:
| Q |
479 |
tcacttttcacagtggacatagagttgtcacaaagctatttttcaaagaccaaggacagtcattggtttctgaataaata |
558 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
38673084 |
tcacttttcacagtggacataaagttgtcgcaaagctattttgcaaagaccaaggacaatcattggtttcggaataaata |
38673005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 364 - 433
Target Start/End: Complemental strand, 38673267 - 38673198
Alignment:
| Q |
364 |
tataccctattccaaattaggcttgccaacttctagtgcaagctaactccttttgtacatttaatcatct |
433 |
Q |
| |
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||||||||||||| ||||| | |||| || ||||||| |||||||||||||||||||||||||||||||| |
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| T |
38673267 |
tataccctattcctaattatgtttgcaaagttctagtacaagctaactccttttgtacatttaatcatct |
38673198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 689 - 803
Target Start/End: Complemental strand, 38672782 - 38672672
Alignment:
| Q |
689 |
agcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctg |
788 |
Q |
| |
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||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||| |||||||| ||||| || |||||||||||| ||||| | |
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| T |
38672782 |
agcacatcttttccctgttatatgcagtaagtac----atttcgtctacaattaaattttgaagataatctttcctgtaacattaaaaacttaagtgtcg |
38672687 |
T |
|
| Q |
789 |
ccatactcgataaac |
803 |
Q |
| |
|
|||||||||||||| |
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|
| T |
38672686 |
tcatactcgataaac |
38672672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 38673516 - 38673451
Alignment:
| Q |
154 |
ttgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgattgaagttcgca |
219 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||| | ||||||||||| ||||| |||||||||||| |
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| T |
38673516 |
ttgacttcattaaggttcagtttaggatgtcactaatctgtattagtttagcgcttgaagttcgca |
38673451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 38673411 - 38673359
Alignment:
| Q |
243 |
gttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaa |
295 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| |
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|
| T |
38673411 |
gttttatccgtttatcgtcttgtttttgctgaagcatcggataatgttctcaa |
38673359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 681
Target Start/End: Complemental strand, 38672891 - 38672836
Alignment:
| Q |
626 |
tttggtgcaggcttatgataccaaagtcagaatcacaatggaaggggcagaaccat |
681 |
Q |
| |
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||||||||||||| |||||| |||| ||||||| ||||||||| ||||||||||| |
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|
| T |
38672891 |
tttggtgcaggctgatgatatcaaattcagaatggcaatggaagaggcagaaccat |
38672836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 473
Target Start/End: Complemental strand, 38673159 - 38673124
Alignment:
| Q |
438 |
ctcactccataactgactattaacaatgagaatcat |
473 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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|
| T |
38673159 |
ctcactcgataactgactattaacaatgagaatcat |
38673124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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