View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4344-Insertion-4 (Length: 866)

Name: NF4344-Insertion-4
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4344-Insertion-4
NF4344-Insertion-4
[»] chr8 (2 HSPs)
chr8 (10-715)||(37258264-37258969)
chr8 (771-861)||(37258124-37258214)


Alignment Details
Target: chr8 (Bit Score: 669; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 10 - 715
Target Start/End: Complemental strand, 37258969 - 37258264
Alignment:
Q  10 aacaacatcaaaaacatcnnnnnnngacctaacaatacgatccggttacaaatcctatgaagcctacatccaacgtcaactcaacaaaactctcaacaca 109  Q
    ||||||||||||||||||       ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37258969 aacaacatcaaaaacatcaaaaaaagacctaacaatacgacccggttacaagtcctatgaagcctacatccaacgtcaactcaacaaaactctcaacaca 37258870  T
Q  110 aaactacgaaaaatatggacaacacgcgactggaaccgcaagatcccagttttcgccaaattcttctccgaactcaagaccaagaatctcctccaagaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37258869 aaactacgaaaaatatggacaacacgcgactggaaccgcaagatcccagttttcgccaaattcttctccgaactcaagaccaagaatctcctccaagaaa 37258770  T
Q  210 catccaaagcattatgtattggtgcacgtgttggacaagaagtcgaagctctacgacgaatcaacgtcgttgattccatcggaatggacctcgttccaca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37258769 catccaaagcattatgtattggtgcacgtgttggacaagaagtcgaagctctacgacgaatcaacgtcgttgattccatcggaatggacctcgttccaca 37258670  T
Q  310 tccaccgttggtcgtggaaggtgatttccataaccaaccgtttggtaacgacacgttcgattttgaattctccaatgtctttgatcatgccctttatcct 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37258669 tccaccgttggtcgtggaaggtgatttccataaccaaccgtttggtaacgacacgttcgattttgaattctccaatgtctttgatcatgccctttatcct 37258570  T
Q  410 cacaaatttgttggtgagattgaacgcacgttgaaacctaatggtgtttgtgtgttacacgtggcgttatctcgtcgtgctgataaatattccgcgaatg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37258569 cacaaatttgttggtgagattgaacgcacgttgaaacctaatggtgtttgtgtgttacacgtggcgttatctcgtcgtgctgataaatattccgctaatg 37258470  T
Q  510 atctttacagtgttgagcctcttgttgagcttttcaagaattcggttttggttcatgttcgtaaagttgatggttttggattggatacggaagttgcgct 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37258469 atctttacagtgttgagcctcttgttgagcttttcaagaattcggttttggttcatgttcgtaaagttgatggttttggattggatacggaagttgcgtt 37258370  T
Q  610 tcgcaagaaaccaccacccactcatcgtcggttctaacatatcagcaatgatacagacaagacaccgattcatgagaaatgttggtgctggagaattctt 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37258369 tcgcaagaaaccaccacccactcatcgtcggttctaacatatcagcaatgatacagacaagacaccgattcatgagaaatgttggtgctggagaattctt 37258270  T
Q  710 aattac 715  Q
    ||||||    
T  37258269 aattac 37258264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 771 - 861
Target Start/End: Complemental strand, 37258214 - 37258124
Alignment:
Q  771 gatgaagttgacgttggatagtggataatgatgattgtgcatatttgccactttgtactcatctaaattgtcaagttcaattgattgactt 861  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37258214 gatgaagttgacgttggatagtggataatgatgattgtgcatatttgccactttgtactcatctaaattgtcaagttcaattgattgactt 37258124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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