View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4344-Insertion-6 (Length: 690)
Name: NF4344-Insertion-6
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Original strand, 20361441 - 20362091
Alignment:
| Q |
8 |
tgtttcacttataaacaatctcttaattaattttgatgattgattctggacaacacaaaccaggtttacgatgctatctgccctccacttgattgcgata |
107 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20361441 |
tgtttcacctataaacaatctcttaattaattttgat---tgattctggacaacacaaaccaggtttacgatgctatctcccctccacttgattgcgata |
20361537 |
T |
|
| Q |
108 |
tatctggcggtattgtacccctcgatttagatgaagatgtgctccctactctcgaaaaactctgcaacgttgctttgaataagcaggttggtaataataa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361538 |
tatctggcggtattgtacccctcgatttagatgaagatgtgctccctactctcgaaaaactctgcaacgttgctttgaataagcaggttggtaataataa |
20361637 |
T |
|
| Q |
208 |
tattgtattgtagtatgtttgnnnnnnngttcattaactaaactaattcttcttttacttatttaattaggctccaacttttgtgtttcataatgttgtc |
307 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361638 |
tattgtattgtagtatgtttgtttttttgttcattaactaaactaattcttcttttacttatttaattaggctccaacttttgtgtttcataatgttgtc |
20361737 |
T |
|
| Q |
308 |
aagtgtacccatcctgctgctactgatttaactgctggtagggtgtattacattacttttcaagcaacacagaaaggaaaacctgatctaacaactttcc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
20361738 |
aagtgtacccatcctgctgctactgatttaactgctggtagggtgtattacattacttttcaagcaacagataaaggaaaacctgatctaacaactttcc |
20361837 |
T |
|
| Q |
408 |
agactcatgttgttcaagatcctggtgttgatgttgttgatgttgatgtcaaaaagtttctcattaaaacctaatacaccccgccatggttatggttatg |
507 |
Q |
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| T |
20361838 |
agactcatgttgttcaagatcctggtgttgatattgttgatgttgatgtcaaaaagtttctcattaaaacctaatacaccccgcc------atggttatg |
20361931 |
T |
|
| Q |
508 |
gttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgccccta |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20361932 |
gttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgccccta |
20362031 |
T |
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| Q |
608 |
acccttgattatgtattccttttgcaggaatctacctgccatgaatatgcttgttttggt |
667 |
Q |
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| T |
20362032 |
acccttgattatgtattccttttgcaggaatctacctgccatggatatgcttgttttggt |
20362091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 8e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 505 - 650
Target Start/End: Original strand, 21549737 - 21549882
Alignment:
| Q |
505 |
atggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgccc |
604 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
21549737 |
atggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatacgttgctgctgctgcattatatttaatcacatcggtatgccc |
21549836 |
T |
|
| Q |
605 |
ctaacccttgattatgtattccttttgcaggaatctacctgccatg |
650 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
21549837 |
ctaacccttaattatgcattccttttgcaggaatctacctgccatg |
21549882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 237 - 374
Target Start/End: Original strand, 21549459 - 21549606
Alignment:
| Q |
237 |
ttcattaactaaactaattct---tctttt-acttattta------attaggctccaacttttgtgtttcataatgttgtcaagtgtacccatcctgctg |
326 |
Q |
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||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||||| |||| |||||||||||||||||||||| || |
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| T |
21549459 |
ttcattaactaaactaattctaattctttttacttatttattattgattagggtccaacttttgtgtttgataaagttgtcaagtgtacccatcctggtg |
21549558 |
T |
|
| Q |
327 |
ctactgatttaactgctggtagggtgtattacattacttttcaagcaa |
374 |
Q |
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||||| |||| |||| |||||| ||||||||||||||| |||||| |
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| T |
21549559 |
ctacttctttatatgctcctagggtatattacattacttttaaagcaa |
21549606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 55193886 - 55193938
Alignment:
| Q |
280 |
tccaacttttgtgtttcataatgttgtcaagtgtacccatcctgctgctactg |
332 |
Q |
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||||||||||||||||||||| |||||||||||||| ||| ||| || ||||| |
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| T |
55193886 |
tccaacttttgtgtttcataaagttgtcaagtgtactcatgctggtggtactg |
55193938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 11031962 - 11031910
Alignment:
| Q |
280 |
tccaacttttgtgtttcataatgttgtcaagtgtacccatcctgctgctactg |
332 |
Q |
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||||||||||||| ||||||| |||||||||||||| ||| ||| || ||||| |
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| T |
11031962 |
tccaacttttgtggttcataaagttgtcaagtgtactcatgctggtggtactg |
11031910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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