View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4344-Insertion-7 (Length: 504)
Name: NF4344-Insertion-7
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 498
Target Start/End: Complemental strand, 6315837 - 6315347
Alignment:
| Q |
8 |
gcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatctaa |
107 |
Q |
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| T |
6315837 |
gcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatctaa |
6315738 |
T |
|
| Q |
108 |
tgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatatca |
207 |
Q |
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| T |
6315737 |
tgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatatca |
6315638 |
T |
|
| Q |
208 |
tttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttctgctaacggatgagcaacttgattggcttgcatccttataaaattaacc |
307 |
Q |
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| T |
6315637 |
tttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacc |
6315538 |
T |
|
| Q |
308 |
cttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaaccaa |
407 |
Q |
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| T |
6315537 |
cttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaaccaa |
6315438 |
T |
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| Q |
408 |
tttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccatcacttcatcttcatttgtaaagggatcc |
498 |
Q |
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| T |
6315437 |
tttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccgtcacttcatcttcatttgtaaagggatcc |
6315347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 51819747 - 51819641
Alignment:
| Q |
37 |
ttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataa---caatctaatgacagttctagtatggaagtggtgg |
133 |
Q |
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|||||||||| ||||| |||||| ||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||| ||||||||| |
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| T |
51819747 |
ttttttatcaatggtacggttgttatcataatgtaatgacaattcctcctttgaaaaatataatactaatctaaatacagttctagcatgaaagtggtgg |
51819648 |
T |
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| Q |
134 |
atattca |
140 |
Q |
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||||||| |
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| T |
51819647 |
atattca |
51819641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 26352201 - 26352137
Alignment:
| Q |
294 |
ttataaaattaacccttaagtttggttttacattaatacggcctctccattttgaaatcatggat |
358 |
Q |
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|||||||||||||||| || | ||||||||||||||| | |||| |||||| ||||||||||| |
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| T |
26352201 |
ttataaaattaaccctccagctgggttttacattaatatagtctctacattttaaaatcatggat |
26352137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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