View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4344-Insertion-8 (Length: 438)
Name: NF4344-Insertion-8
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 422
Target Start/End: Complemental strand, 44683622 - 44683205
Alignment:
| Q |
8 |
ctaaccaccacctcgaagcctatgatgaccaagaattatagattgggtccaaaagaaaattaatgcagctcccatatttacaccgaaggacatccttcca |
107 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44683622 |
ctaaccaccacctcgaagccaatgatgaccaagaattatagattgggtccaaaagaaaattaatgcggctcccatatttacaccgaaggacatccttcca |
44683523 |
T |
|
| Q |
108 |
caacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaatattttccaacctcatatctcggaccccctaacctcccttatcacgg |
207 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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| T |
44683522 |
caacggttgttccggttgcaccaacctccacctccacttagccaaaaggctaatatttaccaacctcatatctcggatccccaaacctcccttatcacgg |
44683423 |
T |
|
| Q |
208 |
gggaaacacgttgttgccc-cttatcccaacacactttctttccaccattgacacctccccataggaattctccttgaattctcaccaccctctgccata |
306 |
Q |
| |
|
| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |
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| T |
44683422 |
gttaaacacaccgttgcccatttcacccaacacactttctttccaccattgacacctccccataggaattctctttgaattctcaccaccctcttccaca |
44683323 |
T |
|
| Q |
307 |
cctttaccgggagcttagaaaaagcaagataaaaaatgcgaatagcattcaaaaccccgataagaaggaccacacaccctcc-tgactcacatacttatt |
405 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||| |||||| |||||||||||||||| |
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| T |
44683322 |
cctttaccggcaacttaaaaaaagcaagataaaaaataggaatagcattcaacaccgcgttaagaaggaccacacgccctccaagactcacatacttatt |
44683223 |
T |
|
| Q |
406 |
t-ccaaagaattaagccc |
422 |
Q |
| |
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| |||||||||||||||| |
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|
| T |
44683222 |
tcccaaagaattaagccc |
44683205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 42111971 - 42112387
Alignment:
| Q |
8 |
ctaaccaccacctcgaagcctatgatgaccaagaattatagattgggtccaaaagaaaattaatgcagctcccatatttacaccgaaggacatccttcca |
107 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
42111971 |
ctaaccaccacctcgaagccaatgatgaccaagaattatagattgggtccaaaagaaaattaatgcggctcccatatttacaccgaaggacatcctttca |
42112070 |
T |
|
| Q |
108 |
caacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaatattttccaacctcatatctcggaccccctaacctcccttatcacgg |
207 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
42112071 |
caacggttgttccggttgcaccaacctccacctccacttagccaaaaggctaatatttaccaacttcatatctcggacccctaaacctcccttatcacgg |
42112170 |
T |
|
| Q |
208 |
gggaaacacgttgttgccc-cttatcccaacacactttctttccaccattgacacctccccataggaattctccttgaattctcaccaccctctgccata |
306 |
Q |
| |
|
|| |||||| ||||||| || |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| ||| | |
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|
| T |
42112171 |
ggtaaacacaccgttgcccatttcacccaacacactttctttccaccgttaacacctccccataggaattctctttgaattctcaccaccctcttccaca |
42112270 |
T |
|
| Q |
307 |
cctttaccgggagcttagaaaaagcaagataaaaaatgcgaatagcattcaaaaccccgataagaaggaccacacaccctcc-tgactcacatacttatt |
405 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||| | ||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
42112271 |
cctttaccggcaacttaaaaaaagcaagataaaaattaggaatagcattcaacaccgcattaagaaggaccacacgccctccaagactcacatacttatt |
42112370 |
T |
|
| Q |
406 |
t-ccaaagaattaagcc |
421 |
Q |
| |
|
| || |||||||||||| |
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|
| T |
42112371 |
tccccaagaattaagcc |
42112387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 376
Target Start/End: Complemental strand, 55352635 - 55352320
Alignment:
| Q |
62 |
gaaaattaatgcagctcccatatttacaccgaaggacatccttccacaacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaat |
161 |
Q |
| |
|
||||| |||| | ||||||||||||||| ||||| ||||||||||||| | ||||||||| ||||||||||||||||||| ||||||| |||| |
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|
| T |
55352635 |
gaaaaataatacggctcccatatttacaaatgaggacctccttccacaacgctttatccggttgcaccaacctccacctccacttggccaaaagactaag |
55352536 |
T |
|
| Q |
162 |
attttccaacctcatatctcggaccccctaacctcccttatcacgggggaaacacgttgttg-ccccttatcccaacacactttctttccaccattgaca |
260 |
Q |
| |
|
|||| ||||||| ||||||| || || |||| ||||| |||| || | ||| ||| | || ||| ||||||||||||||| ||||| |||||| |
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|
| T |
55352535 |
atttaccaaccttatatctctcacacctaaacccccctttgcacgaggaagacaaactgtcgaccatttaacccaacacactttctcaccaccgttgaca |
55352436 |
T |
|
| Q |
261 |
cctccccataggaattctccttgaattctcaccaccctctgccatacctttaccgggagcttagaaaaagcaagataaaaaatgcgaatagcattcaaaa |
360 |
Q |
| |
|
|||||||| ||||| | | ||| |||||||||||| || ||| ||||| ||||| | ||| |||||| ||||| |||||| | ||||||||||| | |
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|
| T |
55352435 |
cctccccaaaggaagttccgttggattctcaccaccttcctccacaccttcaccggtaacttgaaaaaagaaagatgaaaaattgggatagcattcaaca |
55352336 |
T |
|
| Q |
361 |
ccccgataagaaggac |
376 |
Q |
| |
|
|| | |||||||||| |
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|
| T |
55352335 |
ccgcattaagaaggac |
55352320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 55328211 - 55328128
Alignment:
| Q |
77 |
tcccatatttacaccgaaggacatccttccacaacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaa |
160 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||| || ||||||||| ||||| |||||| ||||||| |||||||||||| |
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|
| T |
55328211 |
tcccatatttacaaataaggactttcttccacaacgattgctccggttgcaccaacatccaccaccacttagccaaaaggctaa |
55328128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 3679266 - 3679383
Alignment:
| Q |
77 |
tcccatatttacaccgaaggacatccttccacaacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaatattttccaacctcat |
176 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||||| || ||||||| |||| || ||||||| || |
|
|
| T |
3679266 |
tcccatatttacaaataaggacatccttccacaatgattgttccggttgcaccaacctccacctccatttggccaaaagactaaggttaaccaaccttat |
3679365 |
T |
|
| Q |
177 |
atctcggaccccctaacc |
194 |
Q |
| |
|
||||| |||||| |||| |
|
|
| T |
3679366 |
atctctaacccccaaacc |
3679383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 3762220 - 3762305
Alignment:
| Q |
258 |
acacctccccataggaattctccttgaattctcaccaccctctgccatacctttaccgggagcttagaaaaagcaagataaaaaat |
343 |
Q |
| |
|
||||||||||| || ||||||| || ||||||||||||| ||| ||| ||||||||||| | ||| |||||| ||| |||||||| |
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|
| T |
3762220 |
acacctccccaaagaaattctctttcaattctcaccaccgtcttccacacctttaccggtaacttgaaaaaagaaaggtaaaaaat |
3762305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 6231267 - 6231163
Alignment:
| Q |
77 |
tcccatatttacaccgaaggacatccttccacaacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaatattttccaacctcat |
176 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| || || |||||| ||||||||||||||| || |||||||||||| ||| ||||||| || |
|
|
| T |
6231267 |
tcccatatttacatataaggacctccttccacaacgattgctctggttgcatcaacctccacctccatttggccaaaaggctaagattaaccaacctaat |
6231168 |
T |
|
| Q |
177 |
atctc |
181 |
Q |
| |
|
||||| |
|
|
| T |
6231167 |
atctc |
6231163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 358
Target Start/End: Complemental strand, 6231111 - 6230985
Alignment:
| Q |
232 |
cccaacacactttctttccaccattgacacctccccataggaattctccttgaattctcaccaccctctgccatacctttaccgggagcttagaaaaagc |
331 |
Q |
| |
|
||||||| || || |||||||| || || |||||||| || |||| | ||||||||| |||||| || ||| ||||| ||||| |||||| |||| | |
|
|
| T |
6231111 |
cccaacaaaccttatttccacccttcactcctccccaaagaaattgacgttgaattctaaccaccttcctccacaccttcaccggaagcttaaaaaagga |
6231012 |
T |
|
| Q |
332 |
aagataaaaaatgcgaatagcattcaa |
358 |
Q |
| |
|
|||||||||||| | ||||||||||| |
|
|
| T |
6231011 |
aagataaaaaattgggatagcattcaa |
6230985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 381709 - 381813
Alignment:
| Q |
77 |
tcccatatttacaccgaaggacatccttccacaacggctgttccggttgctccaacctccacctccacttaaccaaaaggctaatattttccaacctcat |
176 |
Q |
| |
|
||||||||||||| |||||| |||||||||| || || || |||||| ||||||||||||||| || |||||||||||| ||| ||||||| || |
|
|
| T |
381709 |
tcccatatttacatataaggacctccttccacagcgattgctctggttgcatcaacctccacctccatttggccaaaaggctaagattaaccaacctaat |
381808 |
T |
|
| Q |
177 |
atctc |
181 |
Q |
| |
|
||||| |
|
|
| T |
381809 |
atctc |
381813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 381879 - 381991
Alignment:
| Q |
246 |
tttccaccattgacacctccccataggaattctccttgaattctcaccaccctctgccatacctttaccgggagcttagaaaaagcaagataaaaaatgc |
345 |
Q |
| |
|
|||||||| || || |||||||| || |||| | ||||||||| |||||| || ||| ||||| ||||| |||||| |||| | |||||||||||| |
|
|
| T |
381879 |
tttccacccttcactcctccccaaagaaattgacgttgaattctaaccaccttcctccacaccttcaccggaagcttaaaaaaggaaagataaaaaattg |
381978 |
T |
|
| Q |
346 |
gaatagcattcaa |
358 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
381979 |
ggatagcattcaa |
381991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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