View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4344_low_1 (Length: 410)
Name: NF4344_low_1
Description: NF4344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4344_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 10594747 - 10594371
Alignment:
| Q |
16 |
cacccaccgtcgccaacccaaagacacctacccaccaccaacccctctcaaccaccgcgactccgacatcagtctcgtcagcagccgcccctcctccgtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10594747 |
cacccaccgtcgccaacccaaagacacctacccaccaccaacccctctcaaccaccgcgactccgacatcagtctcgtcagcagccgcccctcctccgtc |
10594648 |
T |
|
| Q |
116 |
ggaatcccctctttcgacctttacaaagaccgctcctatcaacaatccgccatcgcaaccatcaactcattcctctcctctcacaatttccacatctctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10594647 |
ggaatcccctctttcgacctttacaaagaccgctcctatcaacaatccgccgtcgcaaccatcaactccttcctctcctctcacaatttccacatctctt |
10594548 |
T |
|
| Q |
216 |
tcaaatcttctccttccccttccgctaaacagattcacgaaaccctaattttccttaccaaactccttgaatttcctgttacaaaactcgaagacgatct |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10594547 |
tcaaatcttctccttccccttccgctaaacagatccacgaaaccctaattttccttaccaaactccttgaatttcctgttacaaaactcgaagacgatct |
10594448 |
T |
|
| Q |
316 |
tcctttacttctcaaactcttcaactacccttttaaacttaataaatccattcttaaaaaccctgctaccccgcatc |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10594447 |
tcctttacttctcaaactcttcaactacccttttaaacttaataaatccattcttaaaaaccctgctaccccgcatc |
10594371 |
T |
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